Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3507

Experiment: cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
4,524,029	-		BT3506	0.54	+0.2
4,524,056	+		BT3506	0.55	-0.9
4,524,058	+		BT3506	0.55	+0.8
4,524,059	-		BT3506	0.56	+0.1
4,524,071	-		BT3506	0.56	+2.2
4,524,094	+		BT3506	0.57	+0.8
4,524,094	+		BT3506	0.57	+0.2
4,524,095	-		BT3506	0.57	+0.5
4,524,099	-				-2.2
4,524,108	+		BT3506	0.58	-0.3
4,524,109	-		BT3506	0.58	+1.1
4,524,109	-		BT3506	0.58	-0.9
4,524,116	+		BT3506	0.58	-2.6
4,524,124	+		BT3506	0.59	-0.3
4,524,130	-		BT3506	0.59	-1.0
4,524,146	-		BT3506	0.60	+2.0
4,524,146	-		BT3506	0.60	-0.3
4,524,184	+		BT3506	0.61	+0.6
4,524,185	-		BT3506	0.61	+1.2
4,524,199	-		BT3506	0.62	+0.6
4,524,273	+		BT3506	0.66	-2.0
4,524,273	+		BT3506	0.66	-0.5
4,524,274	-		BT3506	0.66	-2.0
4,524,310	+		BT3506	0.67	-0.2
4,524,311	-		BT3506	0.67	-0.1
4,524,423	-		BT3506	0.73	+0.1
4,524,431	-		BT3506	0.73	-0.9
4,524,482	+		BT3506	0.75	+1.2
4,524,483	-		BT3506	0.76	-3.5
4,524,567	-		BT3506	0.80	-0.5
4,524,571	+		BT3506	0.80	+0.8
4,524,571	+		BT3506	0.80	-1.0
4,524,572	-		BT3506	0.80	+0.1
4,524,574	-		BT3506	0.80	+0.2
4,524,574	-		BT3506	0.80	-0.3
4,524,599	+		BT3506	0.81	-0.5
4,524,604	+		BT3506	0.81	-1.1
4,524,605	-		BT3506	0.81	-0.6
4,524,616	+		BT3506	0.82	-0.3
4,524,652	+		BT3506	0.84	-1.3
4,524,653	-		BT3506	0.84	+0.3
4,524,653	-		BT3506	0.84	+0.7
4,524,713	-		BT3506	0.86	+1.0
4,524,718	+		BT3506	0.87	+1.5
4,524,739	+		BT3506	0.88	-1.9
4,524,744	+		BT3506	0.88	-3.1
4,524,745	-		BT3506	0.88	-2.0
4,524,745	-		BT3506	0.88	-1.8
4,524,822	+				+0.1
4,524,853	+				-2.5
4,524,854	-				+0.4
4,524,887	+				-1.8
4,524,888	-				-2.0
4,524,941	-				-0.1
4,524,956	-				-2.0
4,524,999	-				+0.1
4,525,018	+				-0.6
4,525,021	-				-2.1
4,525,022	+				+0.9
4,525,034	-				-1.7
4,525,038	-				-1.7
4,525,107	+				-0.9
4,525,160	+		BT3507	0.13	+0.7
4,525,160	+		BT3507	0.13	+1.0
4,525,162	+		BT3507	0.13	-1.7
4,525,162	+		BT3507	0.13	-2.8
4,525,164	+		BT3507	0.13	-0.4
4,525,164	+		BT3507	0.13	+0.1
4,525,164	+		BT3507	0.13	-0.5
4,525,165	-		BT3507	0.13	-1.2
4,525,168	+		BT3507	0.14	-2.1
4,525,274	+		BT3507	0.24	-1.3
4,525,292	-		BT3507	0.25	-0.3
4,525,307	+		BT3507	0.27	-0.4
4,525,317	-		BT3507	0.28	+0.3
4,525,327	-		BT3507	0.29	-0.8
4,525,340	+		BT3507	0.30	+2.7
4,525,341	-		BT3507	0.30	-1.1
4,525,346	+		BT3507	0.30	-1.1
4,525,355	-		BT3507	0.31	-0.1
4,525,356	+		BT3507	0.31	-1.9
4,525,359	+		BT3507	0.32	-2.9
4,525,417	+		BT3507	0.37	-0.3
4,525,433	+		BT3507	0.39	+1.4
4,525,451	+		BT3507	0.40	-0.6
4,525,476	-		BT3507	0.43	+1.8
4,525,476	-		BT3507	0.43	+1.4
4,525,493	-		BT3507	0.44	-2.8
4,525,511	-		BT3507	0.46	-1.5
4,525,530	+		BT3507	0.48	+0.2
4,525,530	+		BT3507	0.48	+0.0
4,525,535	-		BT3507	0.48	-0.9
4,525,554	+		BT3507	0.50	-0.3
4,525,554	+		BT3507	0.50	-0.7
4,525,682	+		BT3507	0.62	+0.2
4,525,707	+		BT3507	0.64	+2.1
4,525,707	+		BT3507	0.64	-0.6
4,525,708	-		BT3507	0.65	-0.8
4,525,714	+		BT3507	0.65	-0.8
4,525,715	-		BT3507	0.65	+1.0
4,525,715	-		BT3507	0.65	-0.1
4,525,763	+		BT3507	0.70	+1.7
4,525,763	+		BT3507	0.70	-0.5
4,525,764	-		BT3507	0.70	-0.5
4,525,764	-		BT3507	0.70	+0.6
4,525,773	-		BT3507	0.71	-1.3
4,525,839	-		BT3507	0.77	+2.7
4,525,864	+		BT3507	0.79	+0.4
4,525,939	-		BT3507	0.86	-0.0
4,525,946	-		BT3507	0.87	-1.9
4,525,950	-		BT3507	0.87	+1.7
4,525,976	+		BT3507	0.90	-0.7
4,526,011	+				-1.8
4,526,030	-				+1.9
4,526,045	+				-0.8
4,526,104	+				-4.0
4,526,196	+				-1.8
4,526,241	-				+0.4
4,526,245	+				-2.0
4,526,246	-				-0.3
4,526,246	-				-0.9
4,526,259	+				-0.7
4,526,294	+				-1.4
4,526,311	+				-0.4
4,526,411	-				+0.9
4,526,420	+				-1.0
4,526,424	+				-2.1
4,526,424	+				-0.1
4,526,425	-				+1.2
4,526,426	+				+1.1
4,526,426	+				-0.9
4,526,427	-				+0.7
4,526,428	+				-0.5
4,526,428	+				+0.0
4,526,429	-				-0.8
4,526,459	+				-0.6
4,526,459	+				-2.8
4,526,459	+				-0.2
4,526,459	+				-4.2
4,526,459	+				-0.3
4,526,460	-				-1.0
4,526,472	-				-1.2
4,526,553	-		BT3508	0.13	-1.3
4,526,558	-		BT3508	0.13	-0.6
4,526,580	+		BT3508	0.14	-0.4
4,526,580	+		BT3508	0.14	-0.3
4,526,628	+		BT3508	0.16	+0.8
4,526,646	-		BT3508	0.17	-1.1
4,526,657	+		BT3508	0.17	+0.4
4,526,657	+		BT3508	0.17	+0.6
4,526,658	-		BT3508	0.17	+3.0
4,526,658	-		BT3508	0.17	-0.8
4,526,695	-		BT3508	0.19	-2.6
4,526,727	-		BT3508	0.20	+0.8
4,526,729	+		BT3508	0.20	-0.5
4,526,729	+		BT3508	0.20	+0.5
4,526,729	+		BT3508	0.20	-0.4
4,526,732	-		BT3508	0.20	-2.7
4,526,756	+		BT3508	0.21	+0.2
4,526,757	-		BT3508	0.21	-1.1
4,526,757	-		BT3508	0.21	-1.6
4,526,757	-		BT3508	0.21	-1.2
4,526,868	+		BT3508	0.25	-1.2
4,526,868	+		BT3508	0.25	+1.1
4,526,870	+		BT3508	0.25	+0.2
4,526,875	+		BT3508	0.26	-0.2
4,526,879	-		BT3508	0.26	+0.6
4,526,888	+		BT3508	0.26	-1.0
4,526,999	+		BT3508	0.30	-1.0
4,526,999	+		BT3508	0.30	-2.4
4,527,001	+		BT3508	0.31	-0.7
4,527,002	-		BT3508	0.31	-1.3
4,527,002	-		BT3508	0.31	-1.1
4,527,002	-		BT3508	0.31	-1.6
4,527,004	-		BT3508	0.31	-0.1
4,527,004	-		BT3508	0.31	-0.0
4,527,004	-		BT3508	0.31	+0.8
4,527,079	+		BT3508	0.34	-2.9