Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3302

Experiment: cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
4,234,448	+		BT3301	0.47	-1.4
4,234,506	+		BT3301	0.52	+1.1
4,234,528	+		BT3301	0.54	-2.7
4,234,607	-		BT3301	0.61	-3.0
4,234,633	+		BT3301	0.63	-2.0
4,234,636	+		BT3301	0.63	+0.4
4,234,693	+		BT3301	0.68	-0.7
4,234,737	-		BT3301	0.72	-0.9
4,234,737	-		BT3301	0.72	-0.6
4,234,762	-		BT3301	0.74	-2.3
4,234,784	+		BT3301	0.76	-1.0
4,234,784	+		BT3301	0.76	-0.7
4,234,818	+		BT3301	0.78	-1.2
4,234,827	-		BT3301	0.79	-0.7
4,234,831	-		BT3301	0.79	-0.4
4,234,843	+		BT3301	0.80	-0.8
4,234,885	+		BT3301	0.84	+0.7
4,234,885	+		BT3301	0.84	-1.1
4,234,951	-		BT3301	0.90	-2.2
4,235,082	-				-1.5
4,235,084	+				+0.3
4,235,085	-				-2.4
4,235,087	+				-1.4
4,235,099	+				-0.5
4,235,162	-				-1.0
4,235,195	+				-3.0
4,235,227	-				-1.7
4,235,235	+				-1.2
4,235,238	+				+1.0
4,235,239	-				-1.0
4,235,302	+				-2.7
4,235,303	-				-1.4
4,235,303	-				+0.7
4,235,441	+				-2.5
4,235,484	+				-0.6
4,235,502	+				+0.4
4,235,535	+				+0.9
4,235,535	+				+0.9
4,235,535	+				-1.9
4,235,535	+				+0.2
4,235,684	+				-2.4
4,235,684	+				-1.6
4,235,707	+				-4.6
4,235,798	-				-0.1
4,235,815	-				-0.8
4,235,815	-				-0.6
4,235,815	-				-2.0
4,235,834	-				+3.1
4,235,841	+				-0.6
4,235,842	-				-3.1
4,235,885	-		BT3302	0.11	+0.4
4,235,898	-		BT3302	0.11	-0.2
4,235,903	+		BT3302	0.11	+0.9
4,235,903	+		BT3302	0.11	+1.4
4,235,904	-		BT3302	0.11	-1.2
4,235,906	+		BT3302	0.11	-0.3
4,235,907	-		BT3302	0.11	-0.8
4,235,907	-		BT3302	0.11	-0.0
4,235,907	-		BT3302	0.11	+1.8
4,235,990	-		BT3302	0.13	-0.2
4,236,038	+		BT3302	0.14	+0.4
4,236,038	+		BT3302	0.14	+0.3
4,236,041	-		BT3302	0.15	-2.0
4,236,041	-		BT3302	0.15	-0.4
4,236,043	-		BT3302	0.15	-0.9
4,236,123	+		BT3302	0.17	-1.4
4,236,124	-		BT3302	0.17	-0.8
4,236,147	+		BT3302	0.17	-2.1
4,236,148	-		BT3302	0.17	-0.4
4,236,154	+		BT3302	0.17	-0.0
4,236,154	+		BT3302	0.17	+0.8
4,236,155	-		BT3302	0.17	-0.4
4,236,159	-		BT3302	0.17	-1.2
4,236,167	+		BT3302	0.18	-0.5
4,236,173	+		BT3302	0.18	-0.3
4,236,174	-		BT3302	0.18	-1.0
4,236,190	+		BT3302	0.18	+0.1
4,236,190	+		BT3302	0.18	+1.4
4,236,203	-		BT3302	0.19	-1.9
4,236,210	-		BT3302	0.19	-0.9
4,236,212	-		BT3302	0.19	-2.7
4,236,226	-		BT3302	0.19	+1.5
4,236,254	-		BT3302	0.20	-0.0
4,236,255	+		BT3302	0.20	-0.8
4,236,256	-		BT3302	0.20	+0.5
4,236,292	+		BT3302	0.21	-1.0
4,236,301	-		BT3302	0.21	+1.5
4,236,315	-		BT3302	0.21	+1.4
4,236,317	-		BT3302	0.21	+0.6
4,236,317	-		BT3302	0.21	-1.9
4,236,339	-		BT3302	0.22	-1.5
4,236,371	-		BT3302	0.23	+1.5
4,236,437	+		BT3302	0.24	-1.6
4,236,437	+		BT3302	0.24	+0.0
4,236,438	-		BT3302	0.24	+2.9
4,236,438	-		BT3302	0.24	+1.8
4,236,439	+		BT3302	0.24	-1.2
4,236,439	+		BT3302	0.24	+1.2
4,236,439	+		BT3302	0.24	+1.1
4,236,440	-		BT3302	0.24	-0.7
4,236,443	+		BT3302	0.24	+0.4
4,236,486	+		BT3302	0.25	-2.0
4,236,524	+		BT3302	0.26	+3.4
4,236,525	-		BT3302	0.26	+1.3
4,236,552	+		BT3302	0.27	-0.0
4,236,577	-		BT3302	0.28	+2.1
4,236,641	-		BT3302	0.29	+0.8
4,236,671	-		BT3302	0.30	-0.0
4,236,728	+		BT3302	0.31	+0.3
4,236,728	+		BT3302	0.31	-0.2
4,236,732	-		BT3302	0.31	-0.7
4,236,732	-		BT3302	0.31	-0.2
4,236,794	+		BT3302	0.33	-0.3
4,236,794	+		BT3302	0.33	+2.5
4,236,795	-		BT3302	0.33	-0.3
4,236,798	+		BT3302	0.33	-0.3
4,236,826	+		BT3302	0.34	-0.3
4,236,826	+		BT3302	0.34	+0.5
4,236,857	-		BT3302	0.34	+0.8
4,236,891	+		BT3302	0.35	-1.2
4,236,896	-		BT3302	0.35	+1.8
4,236,919	+		BT3302	0.36	-3.0
4,236,989	-		BT3302	0.38	-1.6
4,237,016	+		BT3302	0.38	-3.9
4,237,016	+		BT3302	0.38	-1.3
4,237,018	+		BT3302	0.38	-1.1
4,237,033	+		BT3302	0.39	-0.4
4,237,044	+		BT3302	0.39	-1.0
4,237,068	+		BT3302	0.40	-2.6
4,237,069	-		BT3302	0.40	+0.6
4,237,069	-		BT3302	0.40	+0.0
4,237,136	-		BT3302	0.41	+1.6
4,237,174	+		BT3302	0.42	-1.3
4,237,175	-		BT3302	0.42	-0.6
4,237,179	+		BT3302	0.42	-1.4
4,237,181	+		BT3302	0.42	-0.9
4,237,183	+		BT3302	0.42	+1.8
4,237,448	+		BT3302	0.49	+1.0
4,237,448	+		BT3302	0.49	-3.9
4,237,481	-		BT3302	0.50	-1.1
4,237,571	-		BT3302	0.52	+0.8
4,237,582	+		BT3302	0.52	+0.7
4,237,583	-		BT3302	0.52	-0.1
4,237,583	-		BT3302	0.52	-2.1
4,237,583	-		BT3302	0.52	-0.6
4,237,596	-		BT3302	0.52	-1.4
4,237,616	-		BT3302	0.53	+0.6
4,237,620	-		BT3302	0.53	-1.8
4,237,620	-		BT3302	0.53	-1.6
4,237,627	+		BT3302	0.53	-0.3
4,237,628	-		BT3302	0.53	+0.5
4,237,628	-		BT3302	0.53	-0.2
4,237,649	-		BT3302	0.54	-1.7
4,237,696	-		BT3302	0.55	-1.7
4,237,728	-		BT3302	0.56	+1.2
4,237,736	-		BT3302	0.56	-1.7
4,237,763	+		BT3302	0.57	+0.3
4,237,796	+		BT3302	0.57	+0.1
4,237,796	+		BT3302	0.57	-2.0
4,237,798	+		BT3302	0.57	-2.7
4,237,799	-		BT3302	0.57	+2.2
4,237,805	-		BT3302	0.58	+0.4
4,237,814	+		BT3302	0.58	-0.6
4,237,815	-		BT3302	0.58	+2.6
4,237,815	-		BT3302	0.58	-1.6
4,237,817	-		BT3302	0.58	-0.8
4,237,817	-		BT3302	0.58	-1.3
4,237,817	-		BT3302	0.58	-0.7
4,237,817	-		BT3302	0.58	+0.8
4,237,830	+		BT3302	0.58	-1.4
4,237,831	-		BT3302	0.58	+0.4
4,237,831	-		BT3302	0.58	-1.4
4,237,900	+		BT3302	0.60	-0.0
4,237,963	+		BT3302	0.61	-1.1
4,237,964	-		BT3302	0.61	-0.8
4,237,973	-		BT3302	0.62	-0.4
4,238,211	-		BT3302	0.67	-2.0
4,238,257	-		BT3302	0.69	-1.9
4,238,336	+		BT3302	0.71	-2.2
4,238,336	+		BT3302	0.71	-1.9
4,238,403	+		BT3302	0.72	-0.2
4,238,459	+		BT3302	0.74	+1.5
4,238,547	+		BT3302	0.76	+1.8
4,238,582	-		BT3302	0.77	-1.9
4,238,610	+		BT3302	0.77	-0.8
4,238,610	+		BT3302	0.77	-1.0
4,238,610	+		BT3302	0.77	+0.4
4,238,611	-		BT3302	0.77	-2.7
4,238,611	-		BT3302	0.77	-0.7
4,238,659	-		BT3302	0.78	-2.4
4,238,746	+		BT3302	0.81	-0.5
4,238,752	+		BT3302	0.81	-3.9
4,238,771	-		BT3302	0.81	+1.0
4,238,793	+		BT3302	0.82	+2.8
4,238,794	-		BT3302	0.82	-0.4
4,238,808	-		BT3302	0.82	-1.0
4,238,808	-		BT3302	0.82	-1.1
4,238,889	+		BT3302	0.84	-0.5
4,238,889	+		BT3302	0.84	-0.7
4,238,889	+		BT3302	0.84	-1.6
4,238,889	+		BT3302	0.84	-0.3
4,238,890	-		BT3302	0.84	-3.7
4,238,967	+		BT3302	0.86	-1.5
4,238,987	-		BT3302	0.86	-0.4
4,238,990	-		BT3302	0.86	-0.6
4,239,032	+		BT3302	0.87	-0.2
4,239,032	+		BT3302	0.87	-1.3
4,239,033	-		BT3302	0.88	-2.3
4,239,033	-		BT3302	0.88	+0.8
4,239,033	-		BT3302	0.88	-0.7
4,239,060	-		BT3302	0.88	-0.7
4,239,118	+		BT3302	0.90	-1.5
4,239,118	+		BT3302	0.90	-2.1
4,239,118	+		BT3302	0.90	+1.4
4,239,118	+		BT3302	0.90	-0.1
4,239,119	-		BT3302	0.90	-2.3
4,239,166	+				-0.8
4,239,205	+				-2.0
4,239,212	-				+0.2
4,239,219	+				-3.8
4,239,220	-				-1.3
4,239,254	-				-1.1
4,239,266	+				-0.5
4,239,267	-				+1.2
4,239,355	-				-0.5
4,239,355	-				-1.4
4,239,355	-				-1.3
4,239,437	-				-1.3
4,239,492	-				-1.4
4,239,532	+				-0.8
4,239,533	-				+0.6
4,239,542	+				-0.2
4,239,581	+				-1.4
4,239,582	-				+0.3
4,239,582	-				-1.2
4,239,583	+				-1.6
4,239,583	+				-2.6
4,239,583	+				-0.7
4,239,584	-				+0.2
4,239,595	+				+0.2
4,239,631	-				-3.2
4,239,636	-				-3.3
4,239,640	+				+1.4
4,239,642	+				-0.7
4,239,670	-				-2.5
4,239,670	-				-0.6
4,239,673	-				-1.5
4,239,727	+				+0.3
4,239,727	+				+1.1
4,239,728	-				-2.0
4,239,728	-				+0.3
4,239,728	-				-1.4
4,239,729	+				+1.8
4,239,730	-				-3.1
4,239,731	+				-1.1
4,239,777	+				-1.1
4,239,813	+				-0.4
4,239,823	+				+2.1
4,239,848	+				-2.0
4,239,849	-				+0.2
4,239,849	-				-1.6
4,239,883	-				+1.9
4,239,940	+				-2.9
4,239,984	-				-1.5
4,239,984	-				+1.7
4,240,011	+				+0.0
4,240,013	+				-1.6
4,240,014	-				-0.3
4,240,088	-				-1.3
4,240,271	-		BT3303	0.12	+0.8
4,240,271	-		BT3303	0.12	+1.0
4,240,370	+		BT3303	0.17	-0.8
4,240,504	+		BT3303	0.24	+1.0
4,240,504	+		BT3303	0.24	-0.6
4,240,505	-		BT3303	0.24	+1.6
4,240,505	-		BT3303	0.24	-1.8
4,240,505	-		BT3303	0.24	-0.8