Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3120

Experiment: cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
3,974,073	+				-2.7
3,974,083	+				-3.2
3,974,122	+				+0.8
3,974,123	-				-0.5
3,974,127	-				+0.0
3,974,195	+		BT3119	0.13	+0.8
3,974,195	+		BT3119	0.13	-1.2
3,974,196	-		BT3119	0.13	-0.9
3,974,206	+		BT3119	0.15	-0.9
3,974,265	+		BT3119	0.24	+1.8
3,974,339	-		BT3119	0.36	-1.9
3,974,339	-		BT3119	0.36	-1.4
3,974,356	+		BT3119	0.38	-1.4
3,974,356	+		BT3119	0.38	+0.7
3,974,357	-		BT3119	0.38	-1.9
3,974,357	-		BT3119	0.38	-1.0
3,974,357	-		BT3119	0.38	-1.6
3,974,360	+		BT3119	0.39	-2.4
3,974,360	+		BT3119	0.39	+0.8
3,974,360	+		BT3119	0.39	-1.4
3,974,360	+		BT3119	0.39	-1.5
3,974,360	+		BT3119	0.39	-2.0
3,974,360	+		BT3119	0.39	-0.3
3,974,361	-		BT3119	0.39	+0.3
3,974,361	-				-1.2
3,974,380	+		BT3119	0.42	+1.8
3,974,458	+		BT3119	0.54	-2.3
3,974,459	-		BT3119	0.54	-2.2
3,974,545	+		BT3119	0.68	-3.1
3,974,545	+		BT3119	0.68	-0.8
3,974,613	+		BT3119	0.78	-0.8
3,974,613	+		BT3119	0.78	-1.2
3,974,613	+		BT3119	0.78	-0.8
3,974,696	+				-2.0
3,974,755	-				-0.0
3,974,772	-				-1.8
3,974,799	-				-1.5
3,974,838	-				+0.6
3,974,838	-				+0.8
3,974,847	-				+2.8
3,974,849	+				-2.7
3,974,850	-				-1.1
3,974,850	-				-0.3
3,974,850	-				-1.4
3,974,908	+				+0.7
3,974,964	+		BT3120	0.10	-1.0
3,974,965	-		BT3120	0.10	+1.2
3,974,995	-		BT3120	0.12	+0.5
3,974,995	-		BT3120	0.12	-1.3
3,974,995	-		BT3120	0.12	+0.9
3,975,025	-		BT3120	0.14	+2.6
3,975,028	-		BT3120	0.15	-2.3
3,975,028	-		BT3120	0.15	+0.3
3,975,037	+		BT3120	0.15	-2.0
3,975,038	-		BT3120	0.15	-1.4
3,975,038	-		BT3120	0.15	+2.8
3,975,038	-		BT3120	0.15	-0.1
3,975,038	-		BT3120	0.15	-3.6
3,975,041	+		BT3120	0.16	+1.5
3,975,048	+		BT3120	0.16	-0.1
3,975,128	+		BT3120	0.22	+0.9
3,975,153	+		BT3120	0.23	-0.3
3,975,154	-		BT3120	0.24	+2.6
3,975,243	+		BT3120	0.30	+0.3
3,975,422	+		BT3120	0.43	+0.2
3,975,423	-		BT3120	0.43	-0.9
3,975,423	-		BT3120	0.43	+0.9
3,975,428	+		BT3120	0.43	+1.6
3,975,429	-		BT3120	0.43	-1.0
3,975,441	+		BT3120	0.44	-0.6
3,975,441	+		BT3120	0.44	+0.4
3,975,442	-		BT3120	0.44	+2.5
3,975,442	-		BT3120	0.44	+0.2
3,975,443	+		BT3120	0.44	+0.5
3,975,443	+		BT3120	0.44	+0.8
3,975,444	-		BT3120	0.44	+0.6
3,975,444	-		BT3120	0.44	+0.1
3,975,444	-		BT3120	0.44	+0.7
3,975,461	+		BT3120	0.45	+1.3
3,975,466	+		BT3120	0.46	-0.1
3,975,466	+		BT3120	0.46	-2.9
3,975,466	+		BT3120	0.46	+0.4
3,975,466	+		BT3120	0.46	+0.6
3,975,467	-		BT3120	0.46	-1.8
3,975,467	-		BT3120	0.46	-1.6
3,975,469	-		BT3120	0.46	-2.4
3,975,635	+		BT3120	0.58	-1.4
3,975,659	-		BT3120	0.59	+0.3
3,975,710	+		BT3120	0.63	-1.2
3,975,741	-		BT3120	0.65	+1.2
3,975,782	+		BT3120	0.68	+2.1
3,975,782	+		BT3120	0.68	-0.8
3,975,782	+		BT3120	0.68	-1.1
3,975,797	+		BT3120	0.69	+0.4
3,975,813	-		BT3120	0.70	+0.8
3,975,824	+		BT3120	0.71	-1.0
3,975,858	-		BT3120	0.73	-1.7
3,975,907	+		BT3120	0.77	-0.3
3,975,910	+		BT3120	0.77	+0.1
3,975,911	-		BT3120	0.77	-0.2
3,975,912	+		BT3120	0.77	+1.0
3,975,913	-		BT3120	0.77	-0.7
3,975,919	+		BT3120	0.78	+0.2
3,975,920	-		BT3120	0.78	-2.7
3,975,920	-		BT3120	0.78	-0.8
3,975,922	-		BT3120	0.78	+1.4
3,975,945	+				-0.8
3,975,971	+		BT3120	0.81	-0.6
3,975,972	-		BT3120	0.81	+0.1
3,975,972	-		BT3120	0.81	-0.6
3,976,043	+		BT3120	0.86	-1.1
3,976,076	+		BT3120	0.89	-0.2
3,976,076	+		BT3120	0.89	-2.7
3,976,077	-		BT3120	0.89	+1.0
3,976,081	+		BT3120	0.89	-1.6
3,976,081	+		BT3120	0.89	-0.6
3,976,081	+		BT3120	0.89	+2.0
3,976,081	+		BT3120	0.89	-1.5
3,976,082	-		BT3120	0.89	-2.5
3,976,082	-		BT3120	0.89	+1.6
3,976,082	-		BT3120	0.89	+0.3
3,976,082	-		BT3120	0.89	-2.4
3,976,082	-		BT3120	0.89	+0.3
3,976,087	+		BT3120	0.90	-0.4
3,976,109	+				-2.4
3,976,110	-				+0.6
3,976,150	+				-1.1
3,976,150	+				+1.7
3,976,151	-				+1.3
3,976,170	+				-0.5
3,976,170	+				-2.4
3,976,175	-				-3.9
3,976,229	+				-2.8
3,976,229	+				+0.4
3,976,232	-				-0.2
3,976,237	+				-2.0
3,976,237	+				-2.6
3,976,238	-				-2.6
3,976,264	-				-0.8
3,976,264	-				-0.2
3,976,264	-				+0.4
3,976,264	-				-1.1
3,976,264	-				-2.1
3,976,276	+				+0.5
3,976,276	+				-2.6
3,976,283	+				-2.5
3,976,284	-				-1.7
3,976,294	+				-2.2
3,976,317	-				-1.2
3,976,327	-				-0.5
3,976,400	+				+0.3
3,976,405	+				-2.2
3,976,406	-				-2.5
3,976,406	-				-1.7
3,976,406	-				-0.4
3,976,408	-				-4.6
3,976,417	+				+0.1
3,976,417	+				-1.7
3,976,441	-				-2.6
3,976,443	-				-1.8
3,976,475	+				-0.9
3,976,604	+				-0.7
3,976,605	-				+0.5
3,976,643	+				+0.2
3,976,646	+				+0.1
3,976,646	+				-3.7
3,976,664	+				+2.2
3,976,676	+		BT3121	0.10	+1.3
3,976,692	+		BT3121	0.11	+1.9
3,976,692	+		BT3121	0.11	-0.2
3,976,754	+		BT3121	0.13	+0.4
3,976,832	-		BT3121	0.16	-0.5
3,976,880	+		BT3121	0.18	-1.0
3,976,910	+		BT3121	0.19	-1.4
3,976,910	+		BT3121	0.19	-1.4
3,976,918	+		BT3121	0.19	-0.2
3,976,928	+		BT3121	0.20	-0.6
3,976,950	+		BT3121	0.21	-1.0
3,977,012	+		BT3121	0.23	-1.6
3,977,039	+		BT3121	0.24	-0.7
3,977,052	+		BT3121	0.25	-1.9
3,977,052	+		BT3121	0.25	-3.1
3,977,053	-		BT3121	0.25	+2.1
3,977,165	+		BT3121	0.29	-1.4