Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2444

Experiment: cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
3,060,371	+		BT2443	0.44	-2.4
3,060,371	+		BT2443	0.44	-0.9
3,060,372	-		BT2443	0.44	+0.9
3,060,372	-		BT2443	0.44	+1.5
3,060,409	+		BT2443	0.47	-0.0
3,060,410	-		BT2443	0.47	-1.4
3,060,438	-		BT2443	0.50	-0.6
3,060,446	+		BT2443	0.50	+0.4
3,060,446	+		BT2443	0.50	-1.6
3,060,447	-		BT2443	0.50	-1.2
3,060,462	-		BT2443	0.51	-0.8
3,060,462	-		BT2443	0.51	-0.3
3,060,511	+		BT2443	0.55	+2.2
3,060,531	+		BT2443	0.57	-2.0
3,060,532	-		BT2443	0.57	+1.1
3,060,532	-		BT2443	0.57	-2.6
3,060,554	+		BT2443	0.59	-1.3
3,060,572	+		BT2443	0.60	-2.7
3,060,573	-		BT2443	0.60	-0.7
3,060,582	-		BT2443	0.61	+0.8
3,060,640	-		BT2443	0.66	-2.0
3,060,670	-		BT2443	0.68	-1.6
3,060,676	-		BT2443	0.69	-0.6
3,060,706	-		BT2443	0.71	+0.4
3,060,709	+		BT2443	0.71	-1.6
3,060,709	+		BT2443	0.71	+0.0
3,060,710	-		BT2443	0.71	-1.8
3,060,738	-		BT2443	0.74	+0.0
3,060,755	+		BT2443	0.75	-1.3
3,060,795	-		BT2443	0.78	+1.5
3,060,795	-		BT2443	0.78	-1.2
3,060,832	+		BT2443	0.81	-1.4
3,060,833	-		BT2443	0.81	-1.5
3,060,913	-		BT2443	0.88	-2.1
3,060,918	-		BT2443	0.88	+1.4
3,060,927	-		BT2443	0.89	-1.5
3,061,010	+				-0.8
3,061,010	+				-0.5
3,061,011	-				-1.0
3,061,011	-				-2.3
3,061,011	-				-0.7
3,061,011	-				+0.1
3,061,012	+				+0.5
3,061,012	+				-0.3
3,061,013	-				+1.4
3,061,055	-				-1.1
3,061,109	-				+2.3
3,061,112	-				+2.7
3,061,112	-				-0.5
3,061,115	-				-0.9
3,061,115	-				+0.3
3,061,115	-				+0.5
3,061,115	-				-1.6
3,061,119	-				-1.6
3,061,131	+				+1.5
3,061,132	-				+0.1
3,061,132	-				+0.2
3,061,160	+				-1.3
3,061,194	+				+0.2
3,061,194	+				-1.2
3,061,217	+				-0.7
3,061,217	+				-2.5
3,061,236	+				+3.1
3,061,237	-				-1.3
3,061,280	+				-1.0
3,061,281	-				-0.9
3,061,295	+				+0.6
3,061,305	-				-1.7
3,061,350	-				-0.8
3,061,350	-				-3.7
3,061,387	-				+1.6
3,061,406	-				+0.9
3,061,408	+				+1.1
3,061,448	-				-0.7
3,061,465	+				-1.0
3,061,472	+				-1.4
3,061,483	+				+0.2
3,061,492	+				-0.2
3,061,496	+				-0.8
3,061,546	+		BT2444	0.14	-1.4
3,061,552	+		BT2444	0.14	-1.5
3,061,559	-		BT2444	0.15	+1.0
3,061,590	-		BT2444	0.17	-0.7
3,061,639	+		BT2444	0.21	-1.6
3,061,648	+		BT2444	0.21	+2.6
3,061,648	+		BT2444	0.21	-0.4
3,061,649	-		BT2444	0.22	-1.0
3,061,649	-		BT2444	0.22	-0.9
3,061,650	+		BT2444	0.22	+0.6
3,061,651	-		BT2444	0.22	-1.6
3,061,652	+		BT2444	0.22	-1.8
3,061,652	+		BT2444	0.22	+0.5
3,061,653	-		BT2444	0.22	-0.2
3,061,653	-		BT2444	0.22	+0.2
3,061,654	+		BT2444	0.22	-1.6
3,061,655	-		BT2444	0.22	+1.6
3,061,655	-		BT2444	0.22	+1.8
3,061,676	+		BT2444	0.24	-0.8
3,061,700	-		BT2444	0.25	+0.6
3,061,728	-		BT2444	0.28	-2.5
3,061,728	-		BT2444	0.28	-2.0
3,061,733	+		BT2444	0.28	-1.8
3,061,734	-		BT2444	0.28	-2.0
3,061,834	+		BT2444	0.36	-0.8
3,061,834	+		BT2444	0.36	-1.3
3,061,878	+		BT2444	0.39	-1.2
3,061,878	+		BT2444	0.39	-1.0
3,061,879	-		BT2444	0.39	-0.6
3,061,879	-		BT2444	0.39	-4.7
3,061,879	-		BT2444	0.39	+0.4
3,061,951	-		BT2444	0.44	-0.4
3,061,972	+		BT2444	0.46	-1.3
3,061,973	-		BT2444	0.46	+1.1
3,061,973	-		BT2444	0.46	-2.0
3,061,975	+		BT2444	0.46	-1.4
3,061,976	-		BT2444	0.46	-1.4
3,061,977	+		BT2444	0.46	-0.8
3,061,993	+		BT2444	0.48	-1.8
3,062,068	+		BT2444	0.53	+0.2
3,062,097	+		BT2444	0.55	-1.5
3,062,097	+		BT2444	0.55	+2.1
3,062,098	-		BT2444	0.55	+1.6
3,062,132	+		BT2444	0.58	-2.3
3,062,133	-		BT2444	0.58	+0.1
3,062,195	-		BT2444	0.63	-1.3
3,062,233	+		BT2444	0.66	-0.3
3,062,233	+		BT2444	0.66	-1.4
3,062,236	+		BT2444	0.66	-0.8
3,062,236	+		BT2444	0.66	+0.3
3,062,237	-		BT2444	0.66	-2.4
3,062,237	-		BT2444	0.66	-0.6
3,062,287	-		BT2444	0.70	-2.5
3,062,289	+		BT2444	0.70	+1.1
3,062,296	-		BT2444	0.70	-1.5
3,062,336	-		BT2444	0.73	+0.2
3,062,338	-		BT2444	0.74	+0.8
3,062,371	+		BT2444	0.76	-1.0
3,062,371	+		BT2444	0.76	-1.3
3,062,384	-		BT2444	0.77	-0.1
3,062,416	+		BT2444	0.80	-2.0
3,062,443	-		BT2444	0.82	-2.7
3,062,468	+		BT2444	0.83	-1.5
3,062,470	+		BT2444	0.84	-0.1
3,062,470	+		BT2444	0.84	-2.2
3,062,475	+		BT2444	0.84	+0.9
3,062,476	-		BT2444	0.84	-1.9
3,062,482	+		BT2444	0.85	-1.4
3,062,516	-		BT2444	0.87	-2.4
3,062,526	+		BT2444	0.88	-1.5
3,062,528	-		BT2444	0.88	-1.1
3,062,544	+		BT2444	0.89	-0.7
3,062,635	+				-1.5
3,062,636	-				+0.0
3,062,636	-				-1.9
3,062,642	+				-4.1
3,062,642	+				-0.4
3,062,711	-				-0.6
3,062,715	-				-1.4
3,062,775	+				+1.0
3,062,782	+				-1.5
3,062,782	+				-0.7
3,062,783	-				-0.0
3,063,024	+				-1.2
3,063,092	-				-1.1
3,063,153	+		BT2445	0.16	+0.5
3,063,192	+		BT2445	0.25	-2.0
3,063,192	+		BT2445	0.25	-0.8
3,063,243	-		BT2445	0.37	+2.1
3,063,243	-		BT2445	0.37	-3.3
3,063,246	-		BT2445	0.37	-0.7
3,063,246	-		BT2445	0.37	-3.0
3,063,256	-		BT2445	0.40	-1.8
3,063,276	+		BT2445	0.44	+0.3
3,063,279	-		BT2445	0.45	+0.9
3,063,283	+		BT2445	0.46	-2.2
3,063,322	-		BT2445	0.55	-0.5
3,063,343	+		BT2445	0.60	+1.0
3,063,344	-		BT2445	0.60	-1.0
3,063,369	-		BT2445	0.66	+0.7
3,063,452	+		BT2445	0.84	-2.5
3,063,470	-		BT2445	0.89	-0.7
3,063,588	+				-1.4