Experiment: cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0504 and BT0505 are separated by 280 nucleotides BT0505 and BT0506 are separated by 178 nucleotides
BT0504: BT0504 - TonB-dependent outer membrane receptor (NCBI ptt file), at 623,432 to 625,771
BT0504
BT0505: BT0505 - conserved hypothetical protein (NCBI ptt file), at 626,052 to 626,621
BT0505
BT0506: BT0506 - beta-hexosaminidase precursor (NCBI ptt file), at 626,800 to 629,103
BT0506
Position (kb) 626
627 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 625.150 kb on - strand, within BT0504 at 625.189 kb on - strand, within BT0504 at 625.231 kb on - strand, within BT0504 at 625.309 kb on - strand, within BT0504 at 625.473 kb on - strand, within BT0504 at 625.473 kb on - strand, within BT0504 at 625.484 kb on - strand, within BT0504 at 625.601 kb on + strand at 625.602 kb on - strand at 625.618 kb on + strand at 625.697 kb on - strand at 625.712 kb on + strand at 625.713 kb on - strand at 625.714 kb on + strand at 625.718 kb on + strand at 625.719 kb on - strand at 625.719 kb on - strand at 625.763 kb on - strand at 626.016 kb on + strand at 626.048 kb on + strand at 626.049 kb on - strand at 626.149 kb on + strand, within BT0505 at 626.150 kb on - strand, within BT0505 at 626.235 kb on - strand, within BT0505 at 626.252 kb on + strand, within BT0505 at 626.292 kb on - strand, within BT0505 at 626.298 kb on - strand, within BT0505 at 626.378 kb on - strand, within BT0505 at 626.402 kb on + strand, within BT0505 at 626.447 kb on - strand, within BT0505 at 626.483 kb on + strand, within BT0505 at 626.656 kb on - strand at 626.742 kb on - strand at 626.744 kb on + strand at 626.744 kb on + strand at 626.750 kb on + strand at 626.794 kb on - strand at 626.826 kb on - strand at 626.844 kb on + strand at 626.905 kb on - strand at 627.025 kb on - strand at 627.064 kb on + strand, within BT0506 at 627.065 kb on - strand, within BT0506 at 627.206 kb on + strand, within BT0506 at 627.456 kb on + strand, within BT0506 at 627.548 kb on + strand, within BT0506 at 627.577 kb on + strand, within BT0506 at 627.592 kb on - strand, within BT0506 at 627.610 kb on + strand, within BT0506
Per-strain Table
Position Strand Gene LocusTag Fraction cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 remove 625,150 - BT0504 0.73 +0.5 625,189 - BT0504 0.75 -1.8 625,231 - BT0504 0.77 -1.7 625,309 - BT0504 0.80 -1.3 625,473 - BT0504 0.87 -2.5 625,473 - BT0504 0.87 +0.3 625,484 - BT0504 0.88 +0.2 625,601 + -1.3 625,602 - +0.4 625,618 + -0.6 625,697 - +0.2 625,712 + +0.2 625,713 - -1.7 625,714 + +0.1 625,718 + +2.0 625,719 - -1.5 625,719 - -2.5 625,763 - -0.7 626,016 + -0.6 626,048 + +0.7 626,049 - -1.3 626,149 + BT0505 0.17 +0.1 626,150 - BT0505 0.17 -1.4 626,235 - BT0505 0.32 +0.3 626,252 + BT0505 0.35 +0.6 626,292 - BT0505 0.42 -0.3 626,298 - BT0505 0.43 -3.0 626,378 - BT0505 0.57 -0.9 626,402 + BT0505 0.61 +1.7 626,447 - BT0505 0.69 -0.5 626,483 + BT0505 0.76 -1.0 626,656 - +1.3 626,742 - +0.1 626,744 + -0.2 626,744 + -0.9 626,750 + -0.8 626,794 - +2.3 626,826 - +1.6 626,844 + -0.8 626,905 - +0.6 627,025 - -0.3 627,064 + BT0506 0.11 -0.4 627,065 - BT0506 0.12 -0.8 627,206 + BT0506 0.18 +0.2 627,456 + BT0506 0.28 -2.2 627,548 + BT0506 0.32 -1.0 627,577 + BT0506 0.34 +0.6 627,592 - BT0506 0.34 -0.5 627,610 + BT0506 0.35 -0.3
Or see this region's nucleotide sequence