Experiment: cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0558 and BT0559 are separated by 3 nucleotides BT0559 and BT0560 are separated by 200 nucleotides
BT0558: BT0558 - mannose-1-phosphate guanylyltransferase (NCBI ptt file), at 693,733 to 694,785
BT0558
BT0559: BT0559 - transcriptional regulator (NCBI ptt file), at 694,789 to 695,682
BT0559
BT0560: BT0560 - outer membrane efflux protein (NCBI ptt file), at 695,883 to 697,112
BT0560
Position (kb) 694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 693.831 kb on - strand at 693.831 kb on - strand at 693.927 kb on + strand, within BT0558 at 693.931 kb on + strand, within BT0558 at 694.018 kb on + strand, within BT0558 at 694.018 kb on + strand, within BT0558 at 694.204 kb on + strand, within BT0558 at 694.207 kb on - strand, within BT0558 at 694.315 kb on + strand, within BT0558 at 694.315 kb on + strand, within BT0558 at 694.357 kb on - strand, within BT0558 at 694.376 kb on + strand, within BT0558 at 694.427 kb on - strand, within BT0558 at 694.596 kb on + strand, within BT0558 at 694.663 kb on - strand, within BT0558 at 694.705 kb on + strand at 694.707 kb on + strand at 694.707 kb on + strand at 694.883 kb on - strand, within BT0559 at 694.934 kb on - strand, within BT0559 at 694.987 kb on + strand, within BT0559 at 694.988 kb on - strand, within BT0559 at 695.001 kb on - strand, within BT0559 at 695.031 kb on - strand, within BT0559 at 695.059 kb on - strand, within BT0559 at 695.148 kb on + strand, within BT0559 at 695.151 kb on - strand, within BT0559 at 695.151 kb on - strand, within BT0559 at 695.151 kb on - strand, within BT0559 at 695.160 kb on + strand, within BT0559 at 695.160 kb on + strand, within BT0559 at 695.168 kb on - strand, within BT0559 at 695.437 kb on - strand, within BT0559 at 695.551 kb on - strand, within BT0559 at 695.628 kb on + strand at 695.776 kb on - strand at 695.791 kb on + strand at 695.799 kb on - strand at 695.807 kb on - strand at 695.915 kb on - strand at 695.921 kb on - strand at 695.949 kb on - strand at 696.082 kb on + strand, within BT0560 at 696.246 kb on - strand, within BT0560 at 696.250 kb on - strand, within BT0560 at 696.280 kb on - strand, within BT0560 at 696.474 kb on + strand, within BT0560 at 696.526 kb on + strand, within BT0560
Per-strain Table
Position Strand Gene LocusTag Fraction cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 remove 693,831 - +0.4 693,831 - +1.4 693,927 + BT0558 0.18 -0.1 693,931 + BT0558 0.19 -2.0 694,018 + BT0558 0.27 -0.9 694,018 + BT0558 0.27 -1.2 694,204 + BT0558 0.45 -0.7 694,207 - BT0558 0.45 -1.0 694,315 + BT0558 0.55 -1.9 694,315 + BT0558 0.55 +0.0 694,357 - BT0558 0.59 +1.1 694,376 + BT0558 0.61 +0.7 694,427 - BT0558 0.66 -0.1 694,596 + BT0558 0.82 +2.7 694,663 - BT0558 0.88 -1.8 694,705 + -0.1 694,707 + -1.8 694,707 + +1.0 694,883 - BT0559 0.11 -1.8 694,934 - BT0559 0.16 -1.8 694,987 + BT0559 0.22 +0.2 694,988 - BT0559 0.22 +0.8 695,001 - BT0559 0.24 -1.8 695,031 - BT0559 0.27 +0.5 695,059 - BT0559 0.30 -3.0 695,148 + BT0559 0.40 -0.8 695,151 - BT0559 0.40 -1.2 695,151 - BT0559 0.40 -2.4 695,151 - BT0559 0.40 -2.5 695,160 + BT0559 0.41 -1.9 695,160 + BT0559 0.41 -1.0 695,168 - BT0559 0.42 -1.2 695,437 - BT0559 0.72 -2.2 695,551 - BT0559 0.85 -1.8 695,628 + +0.6 695,776 - -0.8 695,791 + -0.5 695,799 - -1.3 695,807 - -0.5 695,915 - +0.4 695,921 - -0.6 695,949 - +0.8 696,082 + BT0560 0.16 -0.2 696,246 - BT0560 0.30 +0.9 696,250 - BT0560 0.30 -2.2 696,280 - BT0560 0.32 +0.4 696,474 + BT0560 0.48 -3.2 696,526 + BT0560 0.52 -1.2
Or see this region's nucleotide sequence