Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0137

Experiment: cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0136 and BT0137 are separated by 104 nucleotidesBT0137 and BT0138 are separated by 221 nucleotides BT0136: BT0136 - hypothetical protein (NCBI ptt file), at 131,976 to 133,586 BT0136 BT0137: BT0137 - conserved hypothetical protein (NCBI ptt file), at 133,691 to 135,616 BT0137 BT0138: BT0138 - transcriptional regulator (NCBI ptt file), at 135,838 to 138,585 BT0138 Position (kb) 133 134 135 136Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 132.736 kb on - strand, within BT0136at 132.736 kb on - strand, within BT0136at 132.747 kb on - strand, within BT0136at 132.827 kb on + strand, within BT0136at 132.949 kb on - strand, within BT0136at 132.962 kb on - strand, within BT0136at 132.985 kb on - strand, within BT0136at 133.043 kb on + strand, within BT0136at 133.083 kb on - strand, within BT0136at 133.160 kb on + strand, within BT0136at 133.163 kb on + strand, within BT0136at 133.200 kb on - strand, within BT0136at 133.202 kb on + strand, within BT0136at 133.203 kb on - strand, within BT0136at 133.250 kb on + strand, within BT0136at 133.258 kb on - strand, within BT0136at 133.281 kb on - strand, within BT0136at 133.409 kb on - strand, within BT0136at 133.411 kb on - strand, within BT0136at 133.413 kb on + strand, within BT0136at 133.416 kb on + strand, within BT0136at 133.417 kb on - strand, within BT0136at 133.460 kb on - strandat 133.488 kb on + strandat 133.508 kb on - strandat 133.508 kb on - strandat 133.640 kb on - strandat 133.640 kb on - strandat 133.684 kb on - strandat 133.703 kb on - strandat 133.720 kb on - strandat 133.722 kb on + strandat 133.765 kb on - strandat 133.876 kb on + strandat 133.877 kb on - strandat 133.877 kb on - strandat 133.979 kb on - strand, within BT0137at 133.979 kb on - strand, within BT0137at 133.986 kb on + strand, within BT0137at 134.036 kb on - strand, within BT0137at 134.036 kb on - strand, within BT0137at 134.174 kb on + strand, within BT0137at 134.232 kb on - strand, within BT0137at 134.232 kb on - strand, within BT0137at 134.233 kb on + strand, within BT0137at 134.242 kb on + strand, within BT0137at 134.250 kb on - strand, within BT0137at 134.271 kb on - strand, within BT0137at 134.271 kb on - strand, within BT0137at 134.274 kb on + strand, within BT0137at 134.277 kb on - strand, within BT0137at 134.380 kb on + strand, within BT0137at 134.418 kb on + strand, within BT0137at 134.418 kb on + strand, within BT0137at 134.419 kb on - strand, within BT0137at 134.421 kb on - strand, within BT0137at 134.474 kb on - strand, within BT0137at 134.570 kb on + strand, within BT0137at 134.624 kb on - strand, within BT0137at 134.624 kb on - strand, within BT0137at 134.701 kb on + strand, within BT0137at 134.746 kb on + strand, within BT0137at 134.747 kb on - strand, within BT0137at 134.759 kb on - strand, within BT0137at 134.820 kb on + strand, within BT0137at 134.820 kb on + strand, within BT0137at 134.822 kb on + strand, within BT0137at 134.823 kb on - strand, within BT0137at 134.823 kb on - strand, within BT0137at 134.871 kb on - strand, within BT0137at 134.871 kb on - strand, within BT0137at 134.899 kb on + strand, within BT0137at 134.909 kb on - strand, within BT0137at 134.909 kb on - strand, within BT0137at 134.940 kb on + strand, within BT0137at 134.940 kb on + strand, within BT0137at 134.941 kb on - strand, within BT0137at 134.998 kb on + strand, within BT0137at 135.009 kb on - strand, within BT0137at 135.023 kb on - strand, within BT0137at 135.137 kb on - strand, within BT0137at 135.144 kb on - strand, within BT0137at 135.153 kb on - strand, within BT0137at 135.228 kb on - strand, within BT0137at 135.230 kb on - strand, within BT0137at 135.235 kb on + strand, within BT0137at 135.236 kb on - strand, within BT0137at 135.266 kb on - strand, within BT0137at 135.278 kb on + strand, within BT0137at 135.279 kb on - strand, within BT0137at 135.305 kb on - strand, within BT0137at 135.348 kb on + strand, within BT0137at 135.425 kb on + strandat 135.428 kb on + strandat 135.428 kb on + strandat 135.430 kb on + strandat 135.631 kb on - strandat 135.667 kb on + strandat 135.667 kb on + strandat 135.684 kb on - strandat 135.781 kb on + strandat 135.786 kb on + strandat 135.816 kb on + strandat 135.820 kb on + strandat 135.834 kb on - strandat 135.877 kb on + strandat 135.879 kb on + strandat 136.066 kb on - strandat 136.088 kb on + strandat 136.210 kb on + strand, within BT0138at 136.211 kb on - strand, within BT0138at 136.212 kb on + strand, within BT0138at 136.219 kb on - strand, within BT0138at 136.457 kb on + strand, within BT0138at 136.472 kb on - strand, within BT0138

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Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
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132,736 - BT0136 0.47 +0.1
132,736 - BT0136 0.47 -4.9
132,747 - BT0136 0.48 -0.1
132,827 + BT0136 0.53 +1.3
132,949 - BT0136 0.60 -2.4
132,962 - BT0136 0.61 +0.3
132,985 - BT0136 0.63 +0.1
133,043 + BT0136 0.66 -0.4
133,083 - BT0136 0.69 -1.5
133,160 + BT0136 0.73 -0.6
133,163 + BT0136 0.74 +0.7
133,200 - BT0136 0.76 -0.2
133,202 + BT0136 0.76 -0.6
133,203 - BT0136 0.76 -2.4
133,250 + BT0136 0.79 -2.1
133,258 - BT0136 0.80 +0.2
133,281 - BT0136 0.81 -0.7
133,409 - BT0136 0.89 -0.2
133,411 - BT0136 0.89 -2.6
133,413 + BT0136 0.89 +1.4
133,416 + BT0136 0.89 -1.0
133,417 - BT0136 0.89 -0.7
133,460 - -2.7
133,488 + -1.3
133,508 - -1.5
133,508 - -0.3
133,640 - -2.5
133,640 - -0.1
133,684 - +0.1
133,703 - -1.1
133,720 - -2.6
133,722 + -3.2
133,765 - -0.7
133,876 + -1.5
133,877 - -2.0
133,877 - -2.0
133,979 - BT0137 0.15 -2.3
133,979 - BT0137 0.15 -0.6
133,986 + BT0137 0.15 +1.9
134,036 - BT0137 0.18 +0.7
134,036 - BT0137 0.18 -1.7
134,174 + BT0137 0.25 -1.4
134,232 - BT0137 0.28 -1.5
134,232 - BT0137 0.28 -0.3
134,233 + BT0137 0.28 -0.1
134,242 + BT0137 0.29 -1.3
134,250 - BT0137 0.29 -1.2
134,271 - BT0137 0.30 +0.2
134,271 - BT0137 0.30 -1.0
134,274 + BT0137 0.30 -0.9
134,277 - BT0137 0.30 -2.0
134,380 + BT0137 0.36 -1.3
134,418 + BT0137 0.38 -0.3
134,418 + BT0137 0.38 -2.6
134,419 - BT0137 0.38 -1.4
134,421 - BT0137 0.38 -0.4
134,474 - BT0137 0.41 -2.6
134,570 + BT0137 0.46 -2.3
134,624 - BT0137 0.48 -3.1
134,624 - BT0137 0.48 -1.5
134,701 + BT0137 0.52 +1.1
134,746 + BT0137 0.55 -1.3
134,747 - BT0137 0.55 -1.4
134,759 - BT0137 0.55 -1.4
134,820 + BT0137 0.59 -2.1
134,820 + BT0137 0.59 -2.5
134,822 + BT0137 0.59 -1.5
134,823 - BT0137 0.59 -1.6
134,823 - BT0137 0.59 +2.1
134,871 - BT0137 0.61 -1.7
134,871 - BT0137 0.61 -3.8
134,899 + BT0137 0.63 +1.8
134,909 - BT0137 0.63 -1.3
134,909 - BT0137 0.63 -2.1
134,940 + BT0137 0.65 -2.6
134,940 + BT0137 0.65 +1.7
134,941 - BT0137 0.65 -3.6
134,998 + BT0137 0.68 -2.3
135,009 - BT0137 0.68 -1.6
135,023 - BT0137 0.69 -0.6
135,137 - BT0137 0.75 +0.7
135,144 - BT0137 0.75 -2.1
135,153 - BT0137 0.76 -2.1
135,228 - BT0137 0.80 +0.4
135,230 - BT0137 0.80 +0.9
135,235 + BT0137 0.80 -1.2
135,236 - BT0137 0.80 -1.5
135,266 - BT0137 0.82 -0.3
135,278 + BT0137 0.82 +1.4
135,279 - BT0137 0.82 -1.4
135,305 - BT0137 0.84 +0.4
135,348 + BT0137 0.86 -1.7
135,425 + -1.1
135,428 + -0.5
135,428 + -1.4
135,430 + -1.1
135,631 - -0.4
135,667 + -1.8
135,667 + -0.6
135,684 - +0.2
135,781 + -0.2
135,786 + -0.0
135,816 + +1.8
135,820 + -0.6
135,834 - -1.4
135,877 + -1.6
135,879 + +0.9
136,066 - -1.4
136,088 + +0.7
136,210 + BT0138 0.14 -0.8
136,211 - BT0138 0.14 +0.1
136,212 + BT0138 0.14 -1.1
136,219 - BT0138 0.14 -0.9
136,457 + BT0138 0.23 -1.6
136,472 - BT0138 0.23 -1.7

Or see this region's nucleotide sequence