Experiment: cage1; mouse1; day2; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0052 and BT0053 overlap by 1 nucleotides BT0053 and BT0054 are separated by 52 nucleotides
BT0052: BT0052 - hypothetical protein (NCBI ptt file), at 47,716 to 48,834
BT0052
BT0053: BT0053 - glycosyltransferase (NCBI ptt file), at 48,834 to 49,958
BT0053
BT0054: BT0054 - putative glycosyltransferase (NCBI ptt file), at 50,011 to 51,132
BT0054
Position (kb) 48
49
50 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 47.862 kb on + strand, within BT0052 at 47.863 kb on - strand, within BT0052 at 47.909 kb on - strand, within BT0052 at 47.909 kb on - strand, within BT0052 at 47.992 kb on + strand, within BT0052 at 48.037 kb on + strand, within BT0052 at 48.038 kb on - strand, within BT0052 at 48.038 kb on - strand, within BT0052 at 48.038 kb on - strand, within BT0052 at 48.099 kb on - strand, within BT0052 at 48.152 kb on + strand, within BT0052 at 48.177 kb on + strand, within BT0052 at 48.186 kb on + strand, within BT0052 at 48.189 kb on + strand, within BT0052 at 48.190 kb on - strand, within BT0052 at 48.222 kb on - strand, within BT0052 at 48.242 kb on + strand, within BT0052 at 48.242 kb on + strand, within BT0052 at 48.243 kb on - strand, within BT0052 at 48.324 kb on + strand, within BT0052 at 48.325 kb on - strand, within BT0052 at 48.366 kb on + strand, within BT0052 at 48.414 kb on + strand, within BT0052 at 48.476 kb on + strand, within BT0052 at 48.477 kb on - strand, within BT0052 at 48.502 kb on + strand, within BT0052 at 48.559 kb on + strand, within BT0052 at 48.611 kb on + strand, within BT0052 at 48.685 kb on - strand, within BT0052 at 48.692 kb on + strand, within BT0052 at 48.693 kb on - strand, within BT0052 at 48.723 kb on - strand at 48.760 kb on + strand at 48.845 kb on - strand at 48.845 kb on - strand at 48.847 kb on - strand at 48.847 kb on - strand at 48.890 kb on - strand at 48.927 kb on + strand at 48.934 kb on + strand at 48.934 kb on + strand at 49.021 kb on - strand, within BT0053 at 49.053 kb on - strand, within BT0053 at 49.088 kb on + strand, within BT0053 at 49.109 kb on - strand, within BT0053 at 49.134 kb on - strand, within BT0053 at 49.134 kb on - strand, within BT0053 at 49.348 kb on - strand, within BT0053 at 49.533 kb on - strand, within BT0053 at 49.609 kb on + strand, within BT0053 at 49.692 kb on - strand, within BT0053 at 49.728 kb on - strand, within BT0053 at 49.838 kb on - strand, within BT0053 at 49.878 kb on - strand at 49.963 kb on - strand at 50.003 kb on - strand at 50.099 kb on - strand at 50.115 kb on - strand at 50.139 kb on - strand, within BT0054 at 50.147 kb on + strand, within BT0054 at 50.188 kb on - strand, within BT0054 at 50.188 kb on - strand, within BT0054 at 50.240 kb on - strand, within BT0054 at 50.242 kb on - strand, within BT0054 at 50.242 kb on - strand, within BT0054 at 50.243 kb on + strand, within BT0054 at 50.243 kb on + strand, within BT0054 at 50.286 kb on - strand, within BT0054 at 50.412 kb on - strand, within BT0054 at 50.467 kb on - strand, within BT0054 at 50.467 kb on - strand, within BT0054 at 50.471 kb on + strand, within BT0054 at 50.472 kb on - strand, within BT0054 at 50.472 kb on - strand, within BT0054 at 50.475 kb on - strand, within BT0054 at 50.475 kb on - strand, within BT0054 at 50.540 kb on + strand, within BT0054 at 50.541 kb on - strand, within BT0054 at 50.557 kb on - strand, within BT0054 at 50.609 kb on + strand, within BT0054 at 50.648 kb on + strand, within BT0054 at 50.794 kb on + strand, within BT0054 at 50.797 kb on - strand, within BT0054 at 50.797 kb on - strand, within BT0054 at 50.802 kb on + strand, within BT0054 at 50.816 kb on - strand, within BT0054 at 50.825 kb on - strand, within BT0054 at 50.846 kb on + strand, within BT0054 at 50.943 kb on + strand, within BT0054 at 50.944 kb on - strand, within BT0054
Per-strain Table
Position Strand Gene LocusTag Fraction cage1; mouse1; day2; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 remove 47,862 + BT0052 0.13 -1.6 47,863 - BT0052 0.13 +0.3 47,909 - BT0052 0.17 +0.4 47,909 - BT0052 0.17 -1.7 47,992 + BT0052 0.25 +1.6 48,037 + BT0052 0.29 -0.2 48,038 - BT0052 0.29 +0.6 48,038 - BT0052 0.29 -1.3 48,038 - BT0052 0.29 -0.9 48,099 - BT0052 0.34 -1.4 48,152 + BT0052 0.39 -0.6 48,177 + BT0052 0.41 +0.7 48,186 + BT0052 0.42 +0.7 48,189 + BT0052 0.42 -2.6 48,190 - BT0052 0.42 -1.0 48,222 - BT0052 0.45 +1.3 48,242 + BT0052 0.47 -2.1 48,242 + BT0052 0.47 -1.9 48,243 - BT0052 0.47 -0.8 48,324 + BT0052 0.54 -1.2 48,325 - BT0052 0.54 -1.9 48,366 + BT0052 0.58 +1.8 48,414 + BT0052 0.62 +0.6 48,476 + BT0052 0.68 +1.9 48,477 - BT0052 0.68 -1.2 48,502 + BT0052 0.70 -0.0 48,559 + BT0052 0.75 -1.0 48,611 + BT0052 0.80 -3.4 48,685 - BT0052 0.87 -0.4 48,692 + BT0052 0.87 +0.1 48,693 - BT0052 0.87 -1.1 48,723 - +0.4 48,760 + +1.1 48,845 - -1.0 48,845 - -4.0 48,847 - -1.0 48,847 - -1.4 48,890 - +0.5 48,927 + -1.0 48,934 + -0.2 48,934 + -0.0 49,021 - BT0053 0.17 +0.3 49,053 - BT0053 0.19 -1.1 49,088 + BT0053 0.23 +1.0 49,109 - BT0053 0.24 -2.6 49,134 - BT0053 0.27 -0.8 49,134 - BT0053 0.27 -3.0 49,348 - BT0053 0.46 -1.5 49,533 - BT0053 0.62 -0.8 49,609 + BT0053 0.69 -0.7 49,692 - BT0053 0.76 -2.8 49,728 - BT0053 0.79 -3.0 49,838 - BT0053 0.89 +1.7 49,878 - -1.3 49,963 - +2.3 50,003 - -0.3 50,099 - +0.4 50,115 - -1.2 50,139 - BT0054 0.11 -0.7 50,147 + BT0054 0.12 +0.1 50,188 - BT0054 0.16 -1.9 50,188 - BT0054 0.16 -1.3 50,240 - BT0054 0.20 +3.0 50,242 - BT0054 0.21 -1.4 50,242 - BT0054 0.21 -0.1 50,243 + BT0054 0.21 -1.7 50,243 + BT0054 0.21 -1.4 50,286 - BT0054 0.25 +0.9 50,412 - BT0054 0.36 -0.8 50,467 - BT0054 0.41 +0.3 50,467 - BT0054 0.41 -1.1 50,471 + BT0054 0.41 +1.7 50,472 - BT0054 0.41 -2.6 50,472 - BT0054 0.41 -0.8 50,475 - BT0054 0.41 -0.2 50,475 - BT0054 0.41 -2.0 50,540 + BT0054 0.47 +0.8 50,541 - BT0054 0.47 -0.9 50,557 - BT0054 0.49 -0.8 50,609 + BT0054 0.53 -1.8 50,648 + BT0054 0.57 +2.9 50,794 + BT0054 0.70 -3.0 50,797 - BT0054 0.70 -0.2 50,797 - BT0054 0.70 -1.8 50,802 + BT0054 0.70 -1.2 50,816 - BT0054 0.72 -0.8 50,825 - BT0054 0.73 +0.9 50,846 + BT0054 0.74 -0.3 50,943 + BT0054 0.83 -1.0 50,944 - BT0054 0.83 -1.5
Or see this region's nucleotide sequence