Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23275 and BPHYT_RS23280 are separated by 23 nucleotides BPHYT_RS23280 and BPHYT_RS23285 are separated by 25 nucleotides BPHYT_RS23285 and BPHYT_RS23290 are separated by 263 nucleotides BPHYT_RS23290 and BPHYT_RS23295 are separated by 3 nucleotides
BPHYT_RS23275: BPHYT_RS23275 - 3-methylcrotonyl-CoA carboxylase subunit alpha, at 786,081 to 788,159
_RS23275
BPHYT_RS23280: BPHYT_RS23280 - phosphate ABC transporter substrate-binding protein, at 788,183 to 788,974
_RS23280
BPHYT_RS23285: BPHYT_RS23285 - hypothetical protein, at 789,000 to 789,278
_RS23285
BPHYT_RS23290: BPHYT_RS23290 - hypothetical protein, at 789,542 to 789,730
_RS23290
BPHYT_RS23295: BPHYT_RS23295 - O-methyltransferase, at 789,734 to 790,348
_RS23295
Position (kb) 788
789
790 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 788.200 kb on - strand at 788.408 kb on - strand, within BPHYT_RS23280 at 788.615 kb on - strand, within BPHYT_RS23280 at 788.635 kb on - strand, within BPHYT_RS23280 at 788.944 kb on + strand at 788.945 kb on - strand at 788.946 kb on + strand at 788.947 kb on - strand at 789.268 kb on + strand at 789.278 kb on + strand at 789.339 kb on + strand at 789.560 kb on + strand at 790.070 kb on + strand, within BPHYT_RS23295 at 790.071 kb on - strand, within BPHYT_RS23295 at 790.071 kb on - strand, within BPHYT_RS23295 at 790.163 kb on + strand, within BPHYT_RS23295 at 790.164 kb on - strand, within BPHYT_RS23295 at 790.164 kb on - strand, within BPHYT_RS23295 at 790.228 kb on + strand, within BPHYT_RS23295 at 790.229 kb on - strand, within BPHYT_RS23295
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 788,200 - +1.3 788,408 - BPHYT_RS23280 0.28 -1.0 788,615 - BPHYT_RS23280 0.55 -1.4 788,635 - BPHYT_RS23280 0.57 +0.8 788,944 + +1.2 788,945 - -0.9 788,946 + -0.2 788,947 - +0.3 789,268 + +0.0 789,278 + -0.1 789,339 + +0.3 789,560 + -0.2 790,070 + BPHYT_RS23295 0.55 +0.7 790,071 - BPHYT_RS23295 0.55 -0.2 790,071 - BPHYT_RS23295 0.55 +3.7 790,163 + BPHYT_RS23295 0.70 -2.0 790,164 - BPHYT_RS23295 0.70 +0.0 790,164 - BPHYT_RS23295 0.70 -0.2 790,228 + BPHYT_RS23295 0.80 -1.6 790,229 - BPHYT_RS23295 0.80 +0.1
Or see this region's nucleotide sequence