Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21605 and BPHYT_RS21610 are separated by 188 nucleotides BPHYT_RS21610 and BPHYT_RS21615 are separated by 117 nucleotides BPHYT_RS21615 and BPHYT_RS21620 overlap by 4 nucleotides
BPHYT_RS21605: BPHYT_RS21605 - NmrA family transcriptional regulator, at 403,391 to 404,143
_RS21605
BPHYT_RS21610: BPHYT_RS21610 - DNA-binding protein, at 404,332 to 405,861
_RS21610
BPHYT_RS21615: BPHYT_RS21615 - FMN-dependent NADH-azoreductase, at 405,979 to 406,653
_RS21615
BPHYT_RS21620: BPHYT_RS21620 - GCN5 family acetyltransferase, at 406,650 to 407,117
_RS21620
Position (kb) 404
405
406 Strain fitness (log2 ratio) -1
0
1 at 403.349 kb on + strand at 403.350 kb on - strand at 403.380 kb on + strand at 404.293 kb on + strand at 404.546 kb on - strand, within BPHYT_RS21610 at 404.546 kb on - strand, within BPHYT_RS21610 at 404.898 kb on + strand, within BPHYT_RS21610 at 404.899 kb on - strand, within BPHYT_RS21610 at 405.349 kb on + strand, within BPHYT_RS21610 at 405.397 kb on + strand, within BPHYT_RS21610 at 405.548 kb on - strand, within BPHYT_RS21610 at 405.548 kb on - strand, within BPHYT_RS21610 at 405.548 kb on - strand, within BPHYT_RS21610 at 405.563 kb on + strand, within BPHYT_RS21610 at 405.872 kb on - strand at 405.872 kb on - strand at 405.997 kb on - strand at 405.997 kb on - strand at 406.184 kb on + strand, within BPHYT_RS21615 at 406.735 kb on + strand, within BPHYT_RS21620
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 403,349 + -0.1 403,350 - -0.7 403,380 + +0.4 404,293 + -0.1 404,546 - BPHYT_RS21610 0.14 -1.7 404,546 - BPHYT_RS21610 0.14 +1.7 404,898 + BPHYT_RS21610 0.37 +0.3 404,899 - BPHYT_RS21610 0.37 +1.3 405,349 + BPHYT_RS21610 0.66 +0.1 405,397 + BPHYT_RS21610 0.70 +0.3 405,548 - BPHYT_RS21610 0.79 +0.8 405,548 - BPHYT_RS21610 0.79 -0.2 405,548 - BPHYT_RS21610 0.79 -0.3 405,563 + BPHYT_RS21610 0.80 +0.2 405,872 - -0.0 405,872 - +0.0 405,997 - -1.4 405,997 - -0.6 406,184 + BPHYT_RS21615 0.30 +1.4 406,735 + BPHYT_RS21620 0.18 -0.1
Or see this region's nucleotide sequence