Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19740 and BPHYT_RS19745 are separated by 283 nucleotides BPHYT_RS19745 and BPHYT_RS19750 are separated by 105 nucleotides BPHYT_RS19750 and BPHYT_RS19755 are separated by 241 nucleotides
BPHYT_RS19740: BPHYT_RS19740 - GCN5 family N-acetyltransferase, at 4,442,543 to 4,443,085
_RS19740
BPHYT_RS19745: BPHYT_RS19745 - membrane protein, at 4,443,369 to 4,443,548
_RS19745
BPHYT_RS19750: BPHYT_RS19750 - hypothetical protein, at 4,443,654 to 4,443,851
_RS19750
BPHYT_RS19755: BPHYT_RS19755 - HIT family hydrolase, at 4,444,093 to 4,444,518
_RS19755
Position (kb)
4443
4444 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4442.610 kb on + strand, within BPHYT_RS19740 at 4442.611 kb on - strand, within BPHYT_RS19740 at 4442.673 kb on + strand, within BPHYT_RS19740 at 4442.715 kb on + strand, within BPHYT_RS19740 at 4442.716 kb on - strand, within BPHYT_RS19740 at 4442.748 kb on + strand, within BPHYT_RS19740 at 4442.839 kb on + strand, within BPHYT_RS19740 at 4442.840 kb on - strand, within BPHYT_RS19740 at 4442.840 kb on - strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.842 kb on - strand, within BPHYT_RS19740 at 4442.842 kb on - strand, within BPHYT_RS19740 at 4442.985 kb on + strand, within BPHYT_RS19740 at 4443.152 kb on + strand at 4443.211 kb on - strand at 4443.215 kb on + strand at 4443.216 kb on - strand at 4443.220 kb on + strand at 4443.220 kb on + strand at 4443.220 kb on + strand at 4443.220 kb on + strand at 4443.334 kb on - strand at 4443.617 kb on - strand at 4444.043 kb on + strand at 4444.043 kb on + strand at 4444.044 kb on - strand at 4444.044 kb on - strand at 4444.044 kb on - strand at 4444.511 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 4,442,610 + BPHYT_RS19740 0.12 -0.3 4,442,611 - BPHYT_RS19740 0.13 -1.5 4,442,673 + BPHYT_RS19740 0.24 -0.2 4,442,715 + BPHYT_RS19740 0.32 -1.5 4,442,716 - BPHYT_RS19740 0.32 -1.6 4,442,748 + BPHYT_RS19740 0.38 +1.1 4,442,839 + BPHYT_RS19740 0.55 +1.2 4,442,840 - BPHYT_RS19740 0.55 +0.6 4,442,840 - BPHYT_RS19740 0.55 +0.9 4,442,841 + BPHYT_RS19740 0.55 -1.7 4,442,841 + BPHYT_RS19740 0.55 +0.0 4,442,841 + BPHYT_RS19740 0.55 +0.9 4,442,841 + BPHYT_RS19740 0.55 -0.1 4,442,841 + BPHYT_RS19740 0.55 -0.0 4,442,841 + BPHYT_RS19740 0.55 +0.9 4,442,841 + BPHYT_RS19740 0.55 +1.3 4,442,841 + BPHYT_RS19740 0.55 -1.0 4,442,842 - BPHYT_RS19740 0.55 +1.0 4,442,842 - BPHYT_RS19740 0.55 -0.4 4,442,985 + BPHYT_RS19740 0.81 -0.4 4,443,152 + +0.8 4,443,211 - -0.2 4,443,215 + +0.3 4,443,216 - -1.4 4,443,220 + +2.1 4,443,220 + +0.0 4,443,220 + +1.3 4,443,220 + -0.0 4,443,334 - +0.7 4,443,617 - +3.5 4,444,043 + -0.2 4,444,043 + -1.5 4,444,044 - +0.0 4,444,044 - +2.9 4,444,044 - +1.0 4,444,511 + +0.9
Or see this region's nucleotide sequence