Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18595 and BPHYT_RS18600 overlap by 4 nucleotides BPHYT_RS18600 and BPHYT_RS18605 are separated by 26 nucleotides BPHYT_RS18605 and BPHYT_RS18610 are separated by 82 nucleotides
BPHYT_RS18595: BPHYT_RS18595 - multifunctional CCA protein, at 4,182,788 to 4,184,020
_RS18595
BPHYT_RS18600: BPHYT_RS18600 - glutathione S-transferase, at 4,184,017 to 4,184,670
_RS18600
BPHYT_RS18605: BPHYT_RS18605 - NAD-dependent dehydratase, at 4,184,697 to 4,185,650
_RS18605
BPHYT_RS18610: BPHYT_RS18610 - lytic transglycosylase, at 4,185,733 to 4,187,700
_RS18610
Position (kb) 4184
4185
4186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4184.011 kb on - strand at 4184.115 kb on - strand, within BPHYT_RS18600 at 4184.611 kb on + strand at 4184.643 kb on - strand at 4184.677 kb on + strand at 4184.678 kb on - strand at 4184.758 kb on + strand at 4184.971 kb on + strand, within BPHYT_RS18605 at 4185.019 kb on + strand, within BPHYT_RS18605 at 4185.020 kb on - strand, within BPHYT_RS18605 at 4185.020 kb on - strand, within BPHYT_RS18605 at 4185.086 kb on - strand, within BPHYT_RS18605 at 4185.265 kb on + strand, within BPHYT_RS18605 at 4185.265 kb on + strand, within BPHYT_RS18605 at 4185.266 kb on - strand, within BPHYT_RS18605 at 4185.266 kb on - strand, within BPHYT_RS18605 at 4185.305 kb on + strand, within BPHYT_RS18605 at 4185.305 kb on + strand, within BPHYT_RS18605 at 4185.305 kb on + strand, within BPHYT_RS18605 at 4185.305 kb on + strand, within BPHYT_RS18605 at 4185.305 kb on + strand at 4185.306 kb on - strand, within BPHYT_RS18605 at 4185.306 kb on - strand, within BPHYT_RS18605 at 4185.539 kb on - strand, within BPHYT_RS18605 at 4185.608 kb on + strand at 4185.608 kb on + strand at 4185.627 kb on - strand at 4185.744 kb on + strand at 4185.801 kb on - strand at 4185.830 kb on + strand at 4185.831 kb on - strand at 4185.993 kb on - strand, within BPHYT_RS18610 at 4185.993 kb on - strand, within BPHYT_RS18610 at 4186.545 kb on - strand, within BPHYT_RS18610
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 4,184,011 - -0.2 4,184,115 - BPHYT_RS18600 0.15 +1.8 4,184,611 + -2.1 4,184,643 - -0.5 4,184,677 + -3.3 4,184,678 - +1.4 4,184,758 + -1.7 4,184,971 + BPHYT_RS18605 0.29 -0.6 4,185,019 + BPHYT_RS18605 0.34 -1.9 4,185,020 - BPHYT_RS18605 0.34 -0.3 4,185,020 - BPHYT_RS18605 0.34 -0.4 4,185,086 - BPHYT_RS18605 0.41 -1.2 4,185,265 + BPHYT_RS18605 0.60 -2.2 4,185,265 + BPHYT_RS18605 0.60 -0.9 4,185,266 - BPHYT_RS18605 0.60 -0.5 4,185,266 - BPHYT_RS18605 0.60 -1.0 4,185,305 + BPHYT_RS18605 0.64 -0.7 4,185,305 + BPHYT_RS18605 0.64 -1.3 4,185,305 + BPHYT_RS18605 0.64 -2.0 4,185,305 + BPHYT_RS18605 0.64 -0.6 4,185,305 + +1.2 4,185,306 - BPHYT_RS18605 0.64 -0.8 4,185,306 - BPHYT_RS18605 0.64 -0.6 4,185,539 - BPHYT_RS18605 0.88 -0.1 4,185,608 + -2.0 4,185,608 + -1.7 4,185,627 - -1.2 4,185,744 + -1.5 4,185,801 - +0.4 4,185,830 + -1.2 4,185,831 - -1.4 4,185,993 - BPHYT_RS18610 0.13 -1.2 4,185,993 - BPHYT_RS18610 0.13 -0.3 4,186,545 - BPHYT_RS18610 0.41 +0.6
Or see this region's nucleotide sequence