Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18255

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18250 and BPHYT_RS18255 are separated by 38 nucleotidesBPHYT_RS18255 and BPHYT_RS18260 are separated by 8 nucleotidesBPHYT_RS18260 and BPHYT_RS18265 are separated by 7 nucleotides BPHYT_RS18250: BPHYT_RS18250 - phenylacetate-CoA oxygenase subunit PaaA, at 4,105,416 to 4,106,414 _RS18250 BPHYT_RS18255: BPHYT_RS18255 - phenylacetate-CoA oxygenase subunit PaaB, at 4,106,453 to 4,106,737 _RS18255 BPHYT_RS18260: BPHYT_RS18260 - phenylacetic acid degradation protein, at 4,106,746 to 4,107,549 _RS18260 BPHYT_RS18265: BPHYT_RS18265 - phenylacetate-CoA oxygenase subunit PaaJ, at 4,107,557 to 4,108,108 _RS18265 Position (kb) 4106 4107Strain fitness (log2 ratio) -2 -1 0 1at 4105.707 kb on + strand, within BPHYT_RS18250at 4105.711 kb on + strand, within BPHYT_RS18250at 4105.711 kb on + strand, within BPHYT_RS18250at 4105.712 kb on - strand, within BPHYT_RS18250at 4105.713 kb on + strand, within BPHYT_RS18250at 4105.715 kb on + strand, within BPHYT_RS18250at 4105.785 kb on + strand, within BPHYT_RS18250at 4105.785 kb on + strand, within BPHYT_RS18250at 4105.786 kb on - strand, within BPHYT_RS18250at 4105.803 kb on + strand, within BPHYT_RS18250at 4105.896 kb on + strand, within BPHYT_RS18250at 4106.423 kb on + strandat 4106.491 kb on + strand, within BPHYT_RS18255at 4106.576 kb on + strand, within BPHYT_RS18255at 4106.577 kb on - strand, within BPHYT_RS18255at 4106.687 kb on + strand, within BPHYT_RS18255at 4106.735 kb on + strandat 4106.735 kb on + strandat 4106.736 kb on - strandat 4106.736 kb on - strandat 4106.971 kb on + strand, within BPHYT_RS18260at 4106.971 kb on + strand, within BPHYT_RS18260at 4107.007 kb on + strand, within BPHYT_RS18260at 4107.007 kb on + strand, within BPHYT_RS18260at 4107.007 kb on + strand, within BPHYT_RS18260at 4107.101 kb on - strand, within BPHYT_RS18260at 4107.101 kb on - strand, within BPHYT_RS18260at 4107.196 kb on + strand, within BPHYT_RS18260at 4107.196 kb on + strand, within BPHYT_RS18260at 4107.196 kb on + strand, within BPHYT_RS18260at 4107.196 kb on + strand, within BPHYT_RS18260at 4107.197 kb on - strand, within BPHYT_RS18260at 4107.283 kb on + strand, within BPHYT_RS18260at 4107.283 kb on + strand, within BPHYT_RS18260at 4107.547 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
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4,105,707 + BPHYT_RS18250 0.29 -0.7
4,105,711 + BPHYT_RS18250 0.30 -1.9
4,105,711 + BPHYT_RS18250 0.30 -1.4
4,105,712 - BPHYT_RS18250 0.30 -0.2
4,105,713 + BPHYT_RS18250 0.30 -0.7
4,105,715 + BPHYT_RS18250 0.30 -1.2
4,105,785 + BPHYT_RS18250 0.37 +0.3
4,105,785 + BPHYT_RS18250 0.37 -0.7
4,105,786 - BPHYT_RS18250 0.37 -2.1
4,105,803 + BPHYT_RS18250 0.39 -1.4
4,105,896 + BPHYT_RS18250 0.48 -1.2
4,106,423 + +1.0
4,106,491 + BPHYT_RS18255 0.13 +0.0
4,106,576 + BPHYT_RS18255 0.43 -1.4
4,106,577 - BPHYT_RS18255 0.44 -2.1
4,106,687 + BPHYT_RS18255 0.82 -1.2
4,106,735 + +0.7
4,106,735 + -0.4
4,106,736 - -1.6
4,106,736 - -0.7
4,106,971 + BPHYT_RS18260 0.28 -1.6
4,106,971 + BPHYT_RS18260 0.28 -2.1
4,107,007 + BPHYT_RS18260 0.32 -0.8
4,107,007 + BPHYT_RS18260 0.32 -1.8
4,107,007 + BPHYT_RS18260 0.32 -1.2
4,107,101 - BPHYT_RS18260 0.44 -0.3
4,107,101 - BPHYT_RS18260 0.44 -2.0
4,107,196 + BPHYT_RS18260 0.56 +1.6
4,107,196 + BPHYT_RS18260 0.56 -1.1
4,107,196 + BPHYT_RS18260 0.56 +0.2
4,107,196 + BPHYT_RS18260 0.56 -1.3
4,107,197 - BPHYT_RS18260 0.56 -0.9
4,107,283 + BPHYT_RS18260 0.67 -1.6
4,107,283 + BPHYT_RS18260 0.67 -1.8
4,107,547 + -0.9

Or see this region's nucleotide sequence