Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09845

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS09840 and BPHYT_RS09845 are separated by 32 nucleotidesBPHYT_RS09845 and BPHYT_RS09850 are separated by 34 nucleotides BPHYT_RS09840: BPHYT_RS09840 - nitrite reductase, at 2,234,815 to 2,237,355 _RS09840 BPHYT_RS09845: BPHYT_RS09845 - nitrite reductase, at 2,237,388 to 2,237,741 _RS09845 BPHYT_RS09850: BPHYT_RS09850 - molybdopterin oxidoreductase, at 2,237,776 to 2,241,987 _RS09850 Position (kb) 2237 2238Strain fitness (log2 ratio) -1 0 1 2at 2236.459 kb on + strand, within BPHYT_RS09840at 2236.571 kb on - strand, within BPHYT_RS09840at 2236.993 kb on + strand, within BPHYT_RS09840at 2237.018 kb on - strand, within BPHYT_RS09840at 2237.168 kb on - strandat 2238.486 kb on + strand, within BPHYT_RS09850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
remove
2,236,459 + BPHYT_RS09840 0.65 -0.8
2,236,571 - BPHYT_RS09840 0.69 +0.3
2,236,993 + BPHYT_RS09840 0.86 +1.8
2,237,018 - BPHYT_RS09840 0.87 +0.0
2,237,168 - -0.6
2,238,486 + BPHYT_RS09850 0.17 +0.8

Or see this region's nucleotide sequence