Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01735 and BPHYT_RS01740 are separated by 104 nucleotides BPHYT_RS01740 and BPHYT_RS01745 overlap by 28 nucleotides BPHYT_RS01745 and BPHYT_RS01750 overlap by 10 nucleotides
BPHYT_RS01735: BPHYT_RS01735 - membrane protein, at 394,367 to 396,268
_RS01735
BPHYT_RS01740: BPHYT_RS01740 - hypothetical protein, at 396,373 to 397,395
_RS01740
BPHYT_RS01745: BPHYT_RS01745 - carbon monoxide dehydrogenase subunit G, at 397,368 to 397,964
_RS01745
BPHYT_RS01750: BPHYT_RS01750 - von Willebrand factor A, at 397,955 to 399,241
_RS01750
Position (kb) 396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2 at 395.406 kb on + strand, within BPHYT_RS01735 at 395.406 kb on + strand, within BPHYT_RS01735 at 395.407 kb on - strand, within BPHYT_RS01735 at 395.433 kb on + strand, within BPHYT_RS01735 at 395.433 kb on + strand, within BPHYT_RS01735 at 395.608 kb on - strand, within BPHYT_RS01735 at 395.653 kb on - strand, within BPHYT_RS01735 at 395.751 kb on + strand, within BPHYT_RS01735 at 395.752 kb on - strand, within BPHYT_RS01735 at 395.752 kb on - strand, within BPHYT_RS01735 at 395.752 kb on - strand, within BPHYT_RS01735 at 395.767 kb on + strand, within BPHYT_RS01735 at 396.003 kb on + strand, within BPHYT_RS01735 at 396.051 kb on + strand, within BPHYT_RS01735 at 396.051 kb on + strand, within BPHYT_RS01735 at 396.051 kb on + strand, within BPHYT_RS01735 at 396.051 kb on + strand, within BPHYT_RS01735 at 396.052 kb on - strand, within BPHYT_RS01735 at 396.052 kb on - strand, within BPHYT_RS01735 at 396.085 kb on + strand at 396.085 kb on + strand at 396.172 kb on - strand at 396.289 kb on + strand at 396.289 kb on + strand at 396.312 kb on - strand at 396.531 kb on - strand, within BPHYT_RS01740 at 396.567 kb on + strand, within BPHYT_RS01740 at 396.641 kb on + strand, within BPHYT_RS01740 at 396.642 kb on - strand at 396.766 kb on - strand, within BPHYT_RS01740 at 396.766 kb on - strand, within BPHYT_RS01740 at 396.766 kb on - strand, within BPHYT_RS01740 at 396.806 kb on + strand, within BPHYT_RS01740 at 396.806 kb on + strand, within BPHYT_RS01740 at 396.839 kb on + strand, within BPHYT_RS01740 at 397.037 kb on - strand, within BPHYT_RS01740 at 397.324 kb on + strand at 397.325 kb on - strand at 397.327 kb on + strand at 397.457 kb on + strand, within BPHYT_RS01745 at 397.457 kb on + strand, within BPHYT_RS01745 at 397.457 kb on + strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.744 kb on + strand, within BPHYT_RS01745 at 397.835 kb on - strand, within BPHYT_RS01745 at 398.058 kb on - strand at 398.062 kb on + strand at 398.062 kb on + strand at 398.063 kb on - strand at 398.160 kb on - strand, within BPHYT_RS01750 at 398.160 kb on - strand, within BPHYT_RS01750 at 398.160 kb on - strand, within BPHYT_RS01750
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 395,406 + BPHYT_RS01735 0.55 +0.1 395,406 + BPHYT_RS01735 0.55 -0.1 395,407 - BPHYT_RS01735 0.55 +0.4 395,433 + BPHYT_RS01735 0.56 -0.0 395,433 + BPHYT_RS01735 0.56 +0.9 395,608 - BPHYT_RS01735 0.65 -0.4 395,653 - BPHYT_RS01735 0.68 -0.1 395,751 + BPHYT_RS01735 0.73 -1.8 395,752 - BPHYT_RS01735 0.73 +0.4 395,752 - BPHYT_RS01735 0.73 +0.8 395,752 - BPHYT_RS01735 0.73 +0.3 395,767 + BPHYT_RS01735 0.74 +0.2 396,003 + BPHYT_RS01735 0.86 -0.1 396,051 + BPHYT_RS01735 0.89 -0.5 396,051 + BPHYT_RS01735 0.89 +0.2 396,051 + BPHYT_RS01735 0.89 -0.5 396,051 + BPHYT_RS01735 0.89 +0.7 396,052 - BPHYT_RS01735 0.89 -0.5 396,052 - BPHYT_RS01735 0.89 -0.7 396,085 + -1.1 396,085 + -1.1 396,172 - -1.8 396,289 + -0.1 396,289 + +0.0 396,312 - -0.9 396,531 - BPHYT_RS01740 0.15 -1.6 396,567 + BPHYT_RS01740 0.19 -0.8 396,641 + BPHYT_RS01740 0.26 -1.3 396,642 - +1.5 396,766 - BPHYT_RS01740 0.38 -0.1 396,766 - BPHYT_RS01740 0.38 -1.1 396,766 - BPHYT_RS01740 0.38 -0.3 396,806 + BPHYT_RS01740 0.42 -0.1 396,806 + BPHYT_RS01740 0.42 +0.0 396,839 + BPHYT_RS01740 0.46 -0.4 397,037 - BPHYT_RS01740 0.65 +0.4 397,324 + -0.1 397,325 - +0.2 397,327 + -0.6 397,457 + BPHYT_RS01745 0.15 -1.0 397,457 + BPHYT_RS01745 0.15 -0.2 397,457 + BPHYT_RS01745 0.15 +0.9 397,458 - BPHYT_RS01745 0.15 +2.6 397,458 - BPHYT_RS01745 0.15 -0.6 397,458 - BPHYT_RS01745 0.15 +1.1 397,744 + BPHYT_RS01745 0.63 -0.1 397,835 - BPHYT_RS01745 0.78 -0.2 398,058 - +0.4 398,062 + -0.8 398,062 + -1.9 398,063 - -0.9 398,160 - BPHYT_RS01750 0.16 +0.4 398,160 - BPHYT_RS01750 0.16 -0.4 398,160 - BPHYT_RS01750 0.16 +0.9
Or see this region's nucleotide sequence