Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01065 and BPHYT_RS01070 are separated by 48 nucleotides
BPHYT_RS01065: BPHYT_RS01065 - GMC family oxidoreductase, at 243,160 to 244,938
_RS01065
BPHYT_RS01070: BPHYT_RS01070 - gluconate 2-dehydrogenase, at 244,987 to 245,706
_RS01070
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 244.058 kb on + strand, within BPHYT_RS01065 at 244.058 kb on + strand, within BPHYT_RS01065 at 244.058 kb on + strand, within BPHYT_RS01065 at 244.059 kb on - strand, within BPHYT_RS01065 at 244.059 kb on - strand, within BPHYT_RS01065 at 244.253 kb on + strand, within BPHYT_RS01065 at 244.514 kb on + strand, within BPHYT_RS01065 at 244.514 kb on + strand, within BPHYT_RS01065 at 244.670 kb on + strand, within BPHYT_RS01065 at 244.764 kb on - strand at 244.810 kb on - strand at 245.324 kb on + strand, within BPHYT_RS01070 at 245.325 kb on - strand, within BPHYT_RS01070 at 245.325 kb on - strand, within BPHYT_RS01070 at 245.342 kb on + strand, within BPHYT_RS01070 at 245.343 kb on - strand, within BPHYT_RS01070 at 245.420 kb on + strand, within BPHYT_RS01070 at 245.791 kb on + strand at 245.888 kb on - strand at 246.006 kb on + strand at 246.007 kb on - strand at 246.121 kb on + strand at 246.221 kb on - strand at 246.487 kb on + strand at 246.496 kb on - strand at 246.496 kb on - strand at 246.622 kb on + strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.625 kb on - strand at 246.679 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 244,058 + BPHYT_RS01065 0.50 +3.4 244,058 + BPHYT_RS01065 0.50 +2.1 244,058 + BPHYT_RS01065 0.50 +0.3 244,059 - BPHYT_RS01065 0.51 -0.1 244,059 - BPHYT_RS01065 0.51 -0.4 244,253 + BPHYT_RS01065 0.61 +2.5 244,514 + BPHYT_RS01065 0.76 -0.3 244,514 + BPHYT_RS01065 0.76 -0.2 244,670 + BPHYT_RS01065 0.85 -1.3 244,764 - -1.7 244,810 - +0.7 245,324 + BPHYT_RS01070 0.47 +0.1 245,325 - BPHYT_RS01070 0.47 +0.4 245,325 - BPHYT_RS01070 0.47 -0.6 245,342 + BPHYT_RS01070 0.49 -1.7 245,343 - BPHYT_RS01070 0.49 -0.3 245,420 + BPHYT_RS01070 0.60 -0.5 245,791 + +0.0 245,888 - -1.3 246,006 + -0.0 246,007 - +0.5 246,121 + -1.8 246,221 - -1.5 246,487 + -0.8 246,496 - -0.9 246,496 - -1.6 246,622 + +0.7 246,623 - -0.4 246,623 - +1.2 246,623 - -0.4 246,625 - -0.1 246,679 + -1.1
Or see this region's nucleotide sequence