Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00795 and BPHYT_RS00800 are separated by 14 nucleotides BPHYT_RS00800 and BPHYT_RS00805 overlap by 8 nucleotides BPHYT_RS00805 and BPHYT_RS00810 overlap by 4 nucleotides
BPHYT_RS00795: BPHYT_RS00795 - conjugal transfer protein TraJ, at 180,332 to 181,090
_RS00795
BPHYT_RS00800: BPHYT_RS00800 - Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9), at 181,105 to 181,932
_RS00800
BPHYT_RS00805: BPHYT_RS00805 - type IV secretion system protein VirB10, at 181,925 to 183,127
_RS00805
BPHYT_RS00810: BPHYT_RS00810 - type IV secretion system protein VirB11, at 183,124 to 184,251
_RS00810
Position (kb) 181
182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 181.005 kb on - strand, within BPHYT_RS00795 at 181.142 kb on + strand at 181.143 kb on - strand at 181.171 kb on + strand at 181.172 kb on - strand at 181.366 kb on + strand, within BPHYT_RS00800 at 181.366 kb on + strand, within BPHYT_RS00800 at 181.367 kb on - strand, within BPHYT_RS00800 at 181.430 kb on - strand, within BPHYT_RS00800 at 181.489 kb on + strand, within BPHYT_RS00800 at 181.490 kb on - strand, within BPHYT_RS00800 at 181.490 kb on - strand, within BPHYT_RS00800 at 181.597 kb on - strand, within BPHYT_RS00800 at 181.603 kb on + strand, within BPHYT_RS00800 at 181.676 kb on - strand, within BPHYT_RS00800 at 182.182 kb on - strand, within BPHYT_RS00805 at 182.242 kb on + strand at 182.292 kb on + strand, within BPHYT_RS00805 at 182.339 kb on + strand, within BPHYT_RS00805 at 182.340 kb on - strand, within BPHYT_RS00805 at 182.340 kb on - strand, within BPHYT_RS00805 at 182.343 kb on - strand, within BPHYT_RS00805 at 182.635 kb on + strand, within BPHYT_RS00805 at 182.844 kb on - strand, within BPHYT_RS00805 at 182.844 kb on - strand, within BPHYT_RS00805 at 182.958 kb on - strand, within BPHYT_RS00805 at 182.958 kb on - strand, within BPHYT_RS00805 at 183.098 kb on + strand at 183.099 kb on - strand at 183.099 kb on - strand at 183.171 kb on + strand at 183.172 kb on - strand at 183.638 kb on - strand, within BPHYT_RS00810 at 183.697 kb on - strand, within BPHYT_RS00810 at 183.714 kb on + strand, within BPHYT_RS00810 at 183.844 kb on + strand, within BPHYT_RS00810 at 183.845 kb on - strand, within BPHYT_RS00810 at 183.845 kb on - strand, within BPHYT_RS00810 at 183.959 kb on - strand, within BPHYT_RS00810 at 184.009 kb on + strand, within BPHYT_RS00810 at 184.010 kb on - strand, within BPHYT_RS00810
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 181,005 - BPHYT_RS00795 0.89 -0.6 181,142 + +1.5 181,143 - +0.6 181,171 + +0.2 181,172 - +1.8 181,366 + BPHYT_RS00800 0.32 -0.1 181,366 + BPHYT_RS00800 0.32 +0.0 181,367 - BPHYT_RS00800 0.32 +1.0 181,430 - BPHYT_RS00800 0.39 -0.4 181,489 + BPHYT_RS00800 0.46 +0.8 181,490 - BPHYT_RS00800 0.46 +0.5 181,490 - BPHYT_RS00800 0.46 +0.3 181,597 - BPHYT_RS00800 0.59 -0.1 181,603 + BPHYT_RS00800 0.60 -0.0 181,676 - BPHYT_RS00800 0.69 +0.5 182,182 - BPHYT_RS00805 0.21 -0.5 182,242 + +3.5 182,292 + BPHYT_RS00805 0.31 +0.8 182,339 + BPHYT_RS00805 0.34 +0.3 182,340 - BPHYT_RS00805 0.34 -0.4 182,340 - BPHYT_RS00805 0.34 -0.4 182,343 - BPHYT_RS00805 0.35 +0.1 182,635 + BPHYT_RS00805 0.59 -0.2 182,844 - BPHYT_RS00805 0.76 +0.1 182,844 - BPHYT_RS00805 0.76 +1.1 182,958 - BPHYT_RS00805 0.86 -1.4 182,958 - BPHYT_RS00805 0.86 +0.5 183,098 + +0.1 183,099 - +3.0 183,099 - -0.3 183,171 + +0.3 183,172 - +1.1 183,638 - BPHYT_RS00810 0.46 -1.5 183,697 - BPHYT_RS00810 0.51 -0.5 183,714 + BPHYT_RS00810 0.52 -0.1 183,844 + BPHYT_RS00810 0.64 +0.2 183,845 - BPHYT_RS00810 0.64 -0.3 183,845 - BPHYT_RS00810 0.64 +1.1 183,959 - BPHYT_RS00810 0.74 +0.2 184,009 + BPHYT_RS00810 0.78 -3.0 184,010 - BPHYT_RS00810 0.79 -0.0
Or see this region's nucleotide sequence