Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25785

Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25780 and BPHYT_RS25785 are separated by 65 nucleotidesBPHYT_RS25785 and BPHYT_RS25790 are separated by 15 nucleotides BPHYT_RS25780: BPHYT_RS25780 - DeoR faimly transcriptional regulator, at 1,356,288 to 1,357,013 _RS25780 BPHYT_RS25785: BPHYT_RS25785 - sugar ABC transporter permease, at 1,357,079 to 1,358,137 _RS25785 BPHYT_RS25790: BPHYT_RS25790 - sugar ABC transporter ATP-binding protein, at 1,358,153 to 1,359,655 _RS25790 Position (kb) 1357 1358 1359Strain fitness (log2 ratio) -2 -1 0 1 2at 1356.137 kb on + strandat 1356.720 kb on + strand, within BPHYT_RS25780at 1357.247 kb on - strand, within BPHYT_RS25785at 1357.665 kb on + strand, within BPHYT_RS25785at 1357.666 kb on - strand, within BPHYT_RS25785at 1357.825 kb on - strand, within BPHYT_RS25785at 1358.154 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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1,356,137 + +1.3
1,356,720 + BPHYT_RS25780 0.60 -1.8
1,357,247 - BPHYT_RS25785 0.16 +1.9
1,357,665 + BPHYT_RS25785 0.55 +0.6
1,357,666 - BPHYT_RS25785 0.55 +0.2
1,357,825 - BPHYT_RS25785 0.70 -1.0
1,358,154 + +0.3

Or see this region's nucleotide sequence