Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24820 and BPHYT_RS24825 are separated by 3 nucleotides BPHYT_RS24825 and BPHYT_RS24830 overlap by 4 nucleotides BPHYT_RS24830 and BPHYT_RS24835 overlap by 4 nucleotides
BPHYT_RS24820: BPHYT_RS24820 - cobyrinic acid a,c-diamide synthase, at 1,136,397 to 1,137,695
_RS24820
BPHYT_RS24825: BPHYT_RS24825 - cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase, at 1,137,699 to 1,138,301
_RS24825
BPHYT_RS24830: BPHYT_RS24830 - cobalamin biosynthesis protein CbiG, at 1,138,298 to 1,138,786
_RS24830
BPHYT_RS24835: BPHYT_RS24835 - uroporphyrin-III methyltransferase, at 1,138,783 to 1,139,559
_RS24835
Position (kb) 1137
1138
1139 Strain fitness (log2 ratio) -1
0
1 at 1136.723 kb on - strand, within BPHYT_RS24820 at 1136.723 kb on - strand, within BPHYT_RS24820 at 1136.919 kb on + strand, within BPHYT_RS24820 at 1137.075 kb on + strand, within BPHYT_RS24820 at 1137.075 kb on + strand, within BPHYT_RS24820 at 1137.883 kb on + strand, within BPHYT_RS24825 at 1137.883 kb on + strand, within BPHYT_RS24825 at 1137.884 kb on - strand, within BPHYT_RS24825 at 1138.774 kb on + strand at 1139.059 kb on - strand, within BPHYT_RS24835 at 1139.060 kb on + strand, within BPHYT_RS24835 at 1139.060 kb on + strand, within BPHYT_RS24835 at 1139.061 kb on - strand, within BPHYT_RS24835 at 1139.061 kb on - strand at 1139.061 kb on - strand, within BPHYT_RS24835 at 1139.061 kb on - strand, within BPHYT_RS24835 at 1139.061 kb on - strand, within BPHYT_RS24835 at 1139.061 kb on - strand, within BPHYT_RS24835 at 1139.061 kb on - strand, within BPHYT_RS24835
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 1,136,723 - BPHYT_RS24820 0.25 -1.1 1,136,723 - BPHYT_RS24820 0.25 -0.5 1,136,919 + BPHYT_RS24820 0.40 -0.1 1,137,075 + BPHYT_RS24820 0.52 -0.3 1,137,075 + BPHYT_RS24820 0.52 -0.8 1,137,883 + BPHYT_RS24825 0.31 +0.4 1,137,883 + BPHYT_RS24825 0.31 +0.1 1,137,884 - BPHYT_RS24825 0.31 -1.6 1,138,774 + +0.1 1,139,059 - BPHYT_RS24835 0.36 -0.3 1,139,060 + BPHYT_RS24835 0.36 +0.2 1,139,060 + BPHYT_RS24835 0.36 +0.2 1,139,061 - BPHYT_RS24835 0.36 -0.2 1,139,061 - +0.0 1,139,061 - BPHYT_RS24835 0.36 +0.3 1,139,061 - BPHYT_RS24835 0.36 -0.4 1,139,061 - BPHYT_RS24835 0.36 +0.4 1,139,061 - BPHYT_RS24835 0.36 +0.7 1,139,061 - BPHYT_RS24835 0.36 +0.0
Or see this region's nucleotide sequence