Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19465 and BPHYT_RS19470 are separated by 518 nucleotides BPHYT_RS19470 and BPHYT_RS19475 overlap by 1 nucleotides
BPHYT_RS19465: BPHYT_RS19465 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,379,853 to 4,381,019
_RS19465
BPHYT_RS19470: BPHYT_RS19470 - ABC transporter permease, at 4,381,538 to 4,382,509
_RS19470
BPHYT_RS19475: BPHYT_RS19475 - ABC transporter permease, at 4,382,509 to 4,383,393
_RS19475
Position (kb) 4381
4382
4383 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4380.747 kb on + strand, within BPHYT_RS19465 at 4380.747 kb on + strand, within BPHYT_RS19465 at 4380.748 kb on - strand, within BPHYT_RS19465 at 4380.748 kb on - strand at 4380.748 kb on - strand, within BPHYT_RS19465 at 4380.823 kb on + strand, within BPHYT_RS19465 at 4380.824 kb on - strand, within BPHYT_RS19465 at 4381.031 kb on - strand at 4381.159 kb on + strand at 4381.230 kb on + strand at 4381.253 kb on + strand at 4381.372 kb on - strand at 4381.377 kb on + strand at 4381.384 kb on + strand at 4381.384 kb on + strand at 4381.385 kb on - strand at 4381.385 kb on - strand at 4381.390 kb on - strand at 4381.434 kb on - strand at 4381.434 kb on - strand at 4381.436 kb on - strand at 4381.763 kb on - strand, within BPHYT_RS19470 at 4381.763 kb on - strand, within BPHYT_RS19470 at 4381.816 kb on - strand, within BPHYT_RS19470 at 4382.049 kb on + strand, within BPHYT_RS19470 at 4382.049 kb on + strand, within BPHYT_RS19470 at 4382.049 kb on + strand, within BPHYT_RS19470 at 4382.050 kb on - strand, within BPHYT_RS19470 at 4382.157 kb on + strand, within BPHYT_RS19470 at 4382.157 kb on + strand, within BPHYT_RS19470 at 4382.157 kb on + strand, within BPHYT_RS19470 at 4382.157 kb on + strand, within BPHYT_RS19470 at 4382.158 kb on - strand, within BPHYT_RS19470 at 4382.158 kb on - strand, within BPHYT_RS19470 at 4382.158 kb on - strand, within BPHYT_RS19470 at 4382.158 kb on - strand, within BPHYT_RS19470 at 4382.158 kb on - strand, within BPHYT_RS19470 at 4382.196 kb on + strand, within BPHYT_RS19470 at 4382.196 kb on + strand at 4382.196 kb on + strand, within BPHYT_RS19470 at 4382.323 kb on - strand, within BPHYT_RS19470 at 4382.323 kb on - strand, within BPHYT_RS19470 at 4382.442 kb on + strand at 4382.443 kb on - strand at 4382.490 kb on + strand at 4382.491 kb on - strand at 4383.032 kb on + strand, within BPHYT_RS19475 at 4383.206 kb on + strand, within BPHYT_RS19475 at 4383.321 kb on - strand at 4383.402 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 4,380,747 + BPHYT_RS19465 0.77 +0.6 4,380,747 + BPHYT_RS19465 0.77 -0.2 4,380,748 - BPHYT_RS19465 0.77 +0.0 4,380,748 - +0.8 4,380,748 - BPHYT_RS19465 0.77 -0.7 4,380,823 + BPHYT_RS19465 0.83 +0.4 4,380,824 - BPHYT_RS19465 0.83 -0.7 4,381,031 - +0.2 4,381,159 + +0.5 4,381,230 + +0.1 4,381,253 + +1.6 4,381,372 - -1.9 4,381,377 + -1.0 4,381,384 + -2.4 4,381,384 + -1.8 4,381,385 - -1.1 4,381,385 - -0.3 4,381,390 - -0.3 4,381,434 - -1.2 4,381,434 - +0.2 4,381,436 - +0.9 4,381,763 - BPHYT_RS19470 0.23 +0.6 4,381,763 - BPHYT_RS19470 0.23 +0.4 4,381,816 - BPHYT_RS19470 0.29 +0.1 4,382,049 + BPHYT_RS19470 0.53 +0.2 4,382,049 + BPHYT_RS19470 0.53 -0.0 4,382,049 + BPHYT_RS19470 0.53 +0.0 4,382,050 - BPHYT_RS19470 0.53 +0.6 4,382,157 + BPHYT_RS19470 0.64 +0.1 4,382,157 + BPHYT_RS19470 0.64 -0.4 4,382,157 + BPHYT_RS19470 0.64 -0.4 4,382,157 + BPHYT_RS19470 0.64 +0.0 4,382,158 - BPHYT_RS19470 0.64 -0.5 4,382,158 - BPHYT_RS19470 0.64 +0.3 4,382,158 - BPHYT_RS19470 0.64 +0.5 4,382,158 - BPHYT_RS19470 0.64 -0.2 4,382,158 - BPHYT_RS19470 0.64 +0.5 4,382,196 + BPHYT_RS19470 0.68 +0.6 4,382,196 + +0.8 4,382,196 + BPHYT_RS19470 0.68 +0.1 4,382,323 - BPHYT_RS19470 0.81 -0.7 4,382,323 - BPHYT_RS19470 0.81 +0.1 4,382,442 + +0.0 4,382,443 - +1.8 4,382,490 + +0.6 4,382,491 - +0.1 4,383,032 + BPHYT_RS19475 0.59 +0.4 4,383,206 + BPHYT_RS19475 0.79 +1.6 4,383,321 - +0.1 4,383,402 + +0.7
Or see this region's nucleotide sequence