Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18500

Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18495 and BPHYT_RS18500 are separated by 84 nucleotidesBPHYT_RS18500 and BPHYT_RS18505 are separated by 334 nucleotides BPHYT_RS18495: BPHYT_RS18495 - D-aminoacylase, at 4,160,132 to 4,161,592 _RS18495 BPHYT_RS18500: BPHYT_RS18500 - hypothetical protein, at 4,161,677 to 4,162,588 _RS18500 BPHYT_RS18505: BPHYT_RS18505 - amino acid dehydrogenase, at 4,162,923 to 4,164,149 _RS18505 Position (kb) 4161 4162 4163Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4160.730 kb on + strand, within BPHYT_RS18495at 4160.731 kb on - strand, within BPHYT_RS18495at 4160.750 kb on + strand, within BPHYT_RS18495at 4160.859 kb on - strand, within BPHYT_RS18495at 4160.906 kb on - strand, within BPHYT_RS18495at 4160.923 kb on + strand, within BPHYT_RS18495at 4160.923 kb on + strand, within BPHYT_RS18495at 4160.923 kb on + strand, within BPHYT_RS18495at 4160.924 kb on - strand, within BPHYT_RS18495at 4160.935 kb on - strand, within BPHYT_RS18495at 4160.986 kb on + strand, within BPHYT_RS18495at 4160.987 kb on - strand, within BPHYT_RS18495at 4161.146 kb on + strand, within BPHYT_RS18495at 4161.147 kb on - strand, within BPHYT_RS18495at 4161.151 kb on + strand, within BPHYT_RS18495at 4161.151 kb on + strand, within BPHYT_RS18495at 4161.152 kb on - strand, within BPHYT_RS18495at 4161.152 kb on - strand, within BPHYT_RS18495at 4161.152 kb on - strand, within BPHYT_RS18495at 4161.198 kb on + strand, within BPHYT_RS18495at 4161.198 kb on + strand, within BPHYT_RS18495at 4161.199 kb on - strand, within BPHYT_RS18495at 4161.319 kb on + strand, within BPHYT_RS18495at 4161.320 kb on - strand, within BPHYT_RS18495at 4161.349 kb on + strand, within BPHYT_RS18495at 4161.349 kb on + strand, within BPHYT_RS18495at 4161.350 kb on - strand, within BPHYT_RS18495at 4161.394 kb on + strand, within BPHYT_RS18495at 4161.394 kb on + strand, within BPHYT_RS18495at 4161.395 kb on - strand, within BPHYT_RS18495at 4161.420 kb on - strand, within BPHYT_RS18495at 4161.420 kb on - strand, within BPHYT_RS18495at 4161.420 kb on - strand, within BPHYT_RS18495at 4161.420 kb on - strand, within BPHYT_RS18495at 4161.420 kb on - strand, within BPHYT_RS18495at 4161.422 kb on + strand, within BPHYT_RS18495at 4161.422 kb on + strand, within BPHYT_RS18495at 4161.422 kb on + strand, within BPHYT_RS18495at 4161.422 kb on + strand, within BPHYT_RS18495at 4161.423 kb on - strand, within BPHYT_RS18495at 4161.423 kb on - strand, within BPHYT_RS18495at 4161.423 kb on - strand, within BPHYT_RS18495at 4161.423 kb on - strand, within BPHYT_RS18495at 4161.487 kb on + strandat 4161.519 kb on + strandat 4161.520 kb on - strandat 4161.520 kb on - strandat 4161.679 kb on - strandat 4161.695 kb on - strandat 4161.697 kb on - strandat 4161.745 kb on + strandat 4161.745 kb on + strandat 4161.745 kb on + strandat 4161.746 kb on - strandat 4161.746 kb on - strandat 4161.746 kb on - strandat 4161.746 kb on - strandat 4161.746 kb on - strandat 4161.746 kb on - strandat 4161.747 kb on + strandat 4161.747 kb on + strandat 4161.748 kb on - strandat 4161.748 kb on - strandat 4161.749 kb on + strandat 4161.749 kb on + strandat 4161.749 kb on + strandat 4161.749 kb on + strandat 4161.749 kb on + strandat 4161.750 kb on - strandat 4161.750 kb on - strandat 4161.750 kb on - strandat 4162.018 kb on + strand, within BPHYT_RS18500at 4162.100 kb on - strand, within BPHYT_RS18500at 4162.100 kb on - strand, within BPHYT_RS18500at 4162.149 kb on + strand, within BPHYT_RS18500at 4162.149 kb on + strand, within BPHYT_RS18500at 4162.149 kb on + strand, within BPHYT_RS18500at 4162.150 kb on - strand, within BPHYT_RS18500at 4162.150 kb on - strand, within BPHYT_RS18500at 4162.327 kb on - strand, within BPHYT_RS18500at 4162.359 kb on - strand, within BPHYT_RS18500at 4162.389 kb on + strand, within BPHYT_RS18500at 4162.390 kb on - strand, within BPHYT_RS18500at 4162.458 kb on - strand, within BPHYT_RS18500at 4162.458 kb on - strand, within BPHYT_RS18500at 4162.465 kb on + strand, within BPHYT_RS18500at 4162.466 kb on - strand, within BPHYT_RS18500at 4162.466 kb on - strand, within BPHYT_RS18500at 4162.534 kb on + strandat 4162.535 kb on - strandat 4162.577 kb on - strandat 4162.701 kb on + strandat 4162.771 kb on + strandat 4162.772 kb on - strandat 4162.797 kb on + strandat 4162.798 kb on - strandat 4162.866 kb on - strandat 4162.971 kb on + strandat 4162.993 kb on - strandat 4162.993 kb on - strandat 4163.005 kb on + strandat 4163.067 kb on + strand, within BPHYT_RS18505at 4163.068 kb on - strand, within BPHYT_RS18505at 4163.068 kb on - strandat 4163.073 kb on + strand, within BPHYT_RS18505at 4163.073 kb on + strand, within BPHYT_RS18505at 4163.073 kb on + strand, within BPHYT_RS18505at 4163.074 kb on - strand, within BPHYT_RS18505at 4163.074 kb on - strand, within BPHYT_RS18505at 4163.074 kb on - strand, within BPHYT_RS18505at 4163.246 kb on - strand, within BPHYT_RS18505at 4163.263 kb on - strand, within BPHYT_RS18505

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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4,160,730 + BPHYT_RS18495 0.41 +1.0
4,160,731 - BPHYT_RS18495 0.41 -0.8
4,160,750 + BPHYT_RS18495 0.42 +2.4
4,160,859 - BPHYT_RS18495 0.50 +0.1
4,160,906 - BPHYT_RS18495 0.53 -2.0
4,160,923 + BPHYT_RS18495 0.54 -0.7
4,160,923 + BPHYT_RS18495 0.54 -0.2
4,160,923 + BPHYT_RS18495 0.54 +0.3
4,160,924 - BPHYT_RS18495 0.54 -0.1
4,160,935 - BPHYT_RS18495 0.55 +0.5
4,160,986 + BPHYT_RS18495 0.58 +0.2
4,160,987 - BPHYT_RS18495 0.59 +0.3
4,161,146 + BPHYT_RS18495 0.69 -1.0
4,161,147 - BPHYT_RS18495 0.69 +0.6
4,161,151 + BPHYT_RS18495 0.70 +0.2
4,161,151 + BPHYT_RS18495 0.70 +0.6
4,161,152 - BPHYT_RS18495 0.70 -0.0
4,161,152 - BPHYT_RS18495 0.70 -0.8
4,161,152 - BPHYT_RS18495 0.70 +1.8
4,161,198 + BPHYT_RS18495 0.73 +1.6
4,161,198 + BPHYT_RS18495 0.73 -0.2
4,161,199 - BPHYT_RS18495 0.73 +0.7
4,161,319 + BPHYT_RS18495 0.81 -0.2
4,161,320 - BPHYT_RS18495 0.81 +0.0
4,161,349 + BPHYT_RS18495 0.83 +0.1
4,161,349 + BPHYT_RS18495 0.83 -0.7
4,161,350 - BPHYT_RS18495 0.83 +2.7
4,161,394 + BPHYT_RS18495 0.86 -0.2
4,161,394 + BPHYT_RS18495 0.86 -0.2
4,161,395 - BPHYT_RS18495 0.86 -0.5
4,161,420 - BPHYT_RS18495 0.88 +0.1
4,161,420 - BPHYT_RS18495 0.88 +1.1
4,161,420 - BPHYT_RS18495 0.88 +1.4
4,161,420 - BPHYT_RS18495 0.88 -0.4
4,161,420 - BPHYT_RS18495 0.88 +0.0
4,161,422 + BPHYT_RS18495 0.88 -0.3
4,161,422 + BPHYT_RS18495 0.88 +0.2
4,161,422 + BPHYT_RS18495 0.88 +0.2
4,161,422 + BPHYT_RS18495 0.88 -0.3
4,161,423 - BPHYT_RS18495 0.88 -0.2
4,161,423 - BPHYT_RS18495 0.88 +0.2
4,161,423 - BPHYT_RS18495 0.88 -0.6
4,161,423 - BPHYT_RS18495 0.88 -0.2
4,161,487 + +0.1
4,161,519 + +1.4
4,161,520 - -0.0
4,161,520 - -1.1
4,161,679 - -1.2
4,161,695 - -0.1
4,161,697 - +0.2
4,161,745 + -0.1
4,161,745 + +0.5
4,161,745 + -0.2
4,161,746 - -0.4
4,161,746 - +0.1
4,161,746 - +1.1
4,161,746 - -0.1
4,161,746 - -0.2
4,161,746 - +0.4
4,161,747 + +0.5
4,161,747 + +0.7
4,161,748 - +0.0
4,161,748 - -0.1
4,161,749 + +0.6
4,161,749 + -0.0
4,161,749 + +3.8
4,161,749 + +0.6
4,161,749 + -0.1
4,161,750 - +0.8
4,161,750 - +1.1
4,161,750 - +0.8
4,162,018 + BPHYT_RS18500 0.37 +0.3
4,162,100 - BPHYT_RS18500 0.46 +0.4
4,162,100 - BPHYT_RS18500 0.46 +1.6
4,162,149 + BPHYT_RS18500 0.52 +0.8
4,162,149 + BPHYT_RS18500 0.52 +1.0
4,162,149 + BPHYT_RS18500 0.52 -0.3
4,162,150 - BPHYT_RS18500 0.52 -0.4
4,162,150 - BPHYT_RS18500 0.52 +0.7
4,162,327 - BPHYT_RS18500 0.71 +0.4
4,162,359 - BPHYT_RS18500 0.75 +0.5
4,162,389 + BPHYT_RS18500 0.78 -0.1
4,162,390 - BPHYT_RS18500 0.78 +0.8
4,162,458 - BPHYT_RS18500 0.86 +0.5
4,162,458 - BPHYT_RS18500 0.86 +0.0
4,162,465 + BPHYT_RS18500 0.86 -0.0
4,162,466 - BPHYT_RS18500 0.87 -0.7
4,162,466 - BPHYT_RS18500 0.87 -1.4
4,162,534 + -0.1
4,162,535 - +0.2
4,162,577 - -0.2
4,162,701 + -0.4
4,162,771 + +0.4
4,162,772 - -1.2
4,162,797 + -0.4
4,162,798 - -0.6
4,162,866 - +0.0
4,162,971 + -0.4
4,162,993 - +0.7
4,162,993 - -0.4
4,163,005 + +0.4
4,163,067 + BPHYT_RS18505 0.12 +0.2
4,163,068 - BPHYT_RS18505 0.12 -0.3
4,163,068 - +0.6
4,163,073 + BPHYT_RS18505 0.12 -0.6
4,163,073 + BPHYT_RS18505 0.12 +0.1
4,163,073 + BPHYT_RS18505 0.12 -0.5
4,163,074 - BPHYT_RS18505 0.12 +0.0
4,163,074 - BPHYT_RS18505 0.12 -0.0
4,163,074 - BPHYT_RS18505 0.12 -0.0
4,163,246 - BPHYT_RS18505 0.26 +0.1
4,163,263 - BPHYT_RS18505 0.28 -0.0

Or see this region's nucleotide sequence