Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16610 and BPHYT_RS16615 are separated by 160 nucleotides BPHYT_RS16615 and BPHYT_RS16620 are separated by 122 nucleotides BPHYT_RS16620 and BPHYT_RS16625 are separated by 35 nucleotides
BPHYT_RS16610: BPHYT_RS16610 - amino acid transporter, at 3,763,872 to 3,764,504
_RS16610
BPHYT_RS16615: BPHYT_RS16615 - holliday junction ATP-dependent DNA helicase RuvA, at 3,764,665 to 3,765,246
_RS16615
BPHYT_RS16620: BPHYT_RS16620 - holliday junction ATP-dependent DNA helicase RuvB, at 3,765,369 to 3,766,433
_RS16620
BPHYT_RS16625: BPHYT_RS16625 - hypothetical protein, at 3,766,469 to 3,767,410
_RS16625
Position (kb) 3765
3766
3767 Strain fitness (log2 ratio) -1
0
1
2 at 3764.559 kb on - strand at 3764.590 kb on + strand at 3764.632 kb on - strand at 3765.357 kb on + strand at 3766.641 kb on + strand, within BPHYT_RS16625 at 3766.641 kb on + strand, within BPHYT_RS16625 at 3766.641 kb on + strand, within BPHYT_RS16625 at 3766.642 kb on - strand, within BPHYT_RS16625 at 3766.798 kb on + strand, within BPHYT_RS16625 at 3766.798 kb on + strand, within BPHYT_RS16625 at 3766.983 kb on - strand, within BPHYT_RS16625 at 3766.983 kb on - strand, within BPHYT_RS16625 at 3766.983 kb on - strand, within BPHYT_RS16625 at 3767.099 kb on + strand, within BPHYT_RS16625 at 3767.099 kb on + strand, within BPHYT_RS16625 at 3767.099 kb on + strand, within BPHYT_RS16625 at 3767.099 kb on + strand, within BPHYT_RS16625 at 3767.100 kb on - strand, within BPHYT_RS16625 at 3767.100 kb on - strand, within BPHYT_RS16625 at 3767.187 kb on + strand, within BPHYT_RS16625 at 3767.188 kb on - strand, within BPHYT_RS16625 at 3767.276 kb on + strand, within BPHYT_RS16625 at 3767.395 kb on - strand at 3767.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 3,764,559 - +2.1 3,764,590 + -0.4 3,764,632 - +0.5 3,765,357 + -0.9 3,766,641 + BPHYT_RS16625 0.18 +1.1 3,766,641 + BPHYT_RS16625 0.18 +2.0 3,766,641 + BPHYT_RS16625 0.18 -0.0 3,766,642 - BPHYT_RS16625 0.18 -0.3 3,766,798 + BPHYT_RS16625 0.35 +0.7 3,766,798 + BPHYT_RS16625 0.35 +0.7 3,766,983 - BPHYT_RS16625 0.55 +0.2 3,766,983 - BPHYT_RS16625 0.55 -1.6 3,766,983 - BPHYT_RS16625 0.55 +1.5 3,767,099 + BPHYT_RS16625 0.67 +0.6 3,767,099 + BPHYT_RS16625 0.67 +0.8 3,767,099 + BPHYT_RS16625 0.67 -0.2 3,767,099 + BPHYT_RS16625 0.67 +0.7 3,767,100 - BPHYT_RS16625 0.67 -0.0 3,767,100 - BPHYT_RS16625 0.67 -0.2 3,767,187 + BPHYT_RS16625 0.76 +1.6 3,767,188 - BPHYT_RS16625 0.76 -0.0 3,767,276 + BPHYT_RS16625 0.86 +0.3 3,767,395 - +2.2 3,767,409 - +0.2
Or see this region's nucleotide sequence