Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10755

Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10750 and BPHYT_RS10755 are separated by 119 nucleotidesBPHYT_RS10755 and BPHYT_RS10760 overlap by 2 nucleotides BPHYT_RS10750: BPHYT_RS10750 - LysR family transcriptional regulator, at 2,444,640 to 2,445,572 _RS10750 BPHYT_RS10755: BPHYT_RS10755 - hypothetical protein, at 2,445,692 to 2,445,892 _RS10755 BPHYT_RS10760: BPHYT_RS10760 - major facilitator transporter, at 2,445,891 to 2,447,213 _RS10760 Position (kb) 2445 2446Strain fitness (log2 ratio) -1 0 1at 2444.735 kb on + strand, within BPHYT_RS10750at 2445.655 kb on - strandat 2446.455 kb on + strand, within BPHYT_RS10760at 2446.537 kb on - strand, within BPHYT_RS10760at 2446.719 kb on + strand, within BPHYT_RS10760

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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2,444,735 + BPHYT_RS10750 0.10 -0.6
2,445,655 - -0.3
2,446,455 + BPHYT_RS10760 0.43 +0.4
2,446,537 - BPHYT_RS10760 0.49 +0.3
2,446,719 + BPHYT_RS10760 0.63 -0.2

Or see this region's nucleotide sequence