Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS10740 and BPHYT_RS10745 are separated by 258 nucleotides BPHYT_RS10745 and BPHYT_RS10750 are separated by 28 nucleotides BPHYT_RS10750 and BPHYT_RS10755 are separated by 119 nucleotides BPHYT_RS10755 and BPHYT_RS10760 overlap by 2 nucleotides
BPHYT_RS10740: BPHYT_RS10740 - LuxR family transcriptional regulator, at 2,443,151 to 2,443,813
_RS10740
BPHYT_RS10745: BPHYT_RS10745 - FMN reductase, at 2,444,072 to 2,444,611
_RS10745
BPHYT_RS10750: BPHYT_RS10750 - LysR family transcriptional regulator, at 2,444,640 to 2,445,572
_RS10750
BPHYT_RS10755: BPHYT_RS10755 - hypothetical protein, at 2,445,692 to 2,445,892
_RS10755
BPHYT_RS10760: BPHYT_RS10760 - major facilitator transporter, at 2,445,891 to 2,447,213
_RS10760
Position (kb) 2444
2445
2446 Strain fitness (log2 ratio) -1
0
1 at 2443.911 kb on - strand at 2444.735 kb on + strand, within BPHYT_RS10750 at 2445.655 kb on - strand at 2446.455 kb on + strand, within BPHYT_RS10760 at 2446.537 kb on - strand, within BPHYT_RS10760
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 2,443,911 - -0.8 2,444,735 + BPHYT_RS10750 0.10 -0.6 2,445,655 - -0.3 2,446,455 + BPHYT_RS10760 0.43 +0.4 2,446,537 - BPHYT_RS10760 0.49 +0.3
Or see this region's nucleotide sequence