Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS09970 and BPHYT_RS09975 are separated by 139 nucleotides BPHYT_RS09975 and BPHYT_RS09980 are separated by 125 nucleotides BPHYT_RS09980 and BPHYT_RS09985 are separated by 44 nucleotides
BPHYT_RS09970: BPHYT_RS09970 - glutathione S-transferase, at 2,270,388 to 2,271,011
_RS09970
BPHYT_RS09975: BPHYT_RS09975 - hypothetical protein, at 2,271,151 to 2,271,495
_RS09975
BPHYT_RS09980: BPHYT_RS09980 - TetR family transcriptional regulator, at 2,271,621 to 2,272,262
_RS09980
BPHYT_RS09985: BPHYT_RS09985 - trans-2-enoyl-CoA reductase, at 2,272,307 to 2,273,503
_RS09985
Position (kb) 2271
2272
2273 Strain fitness (log2 ratio) -1
0
1 at 2270.716 kb on - strand, within BPHYT_RS09970 at 2270.802 kb on - strand, within BPHYT_RS09970 at 2270.949 kb on + strand at 2270.950 kb on - strand at 2271.603 kb on - strand at 2271.983 kb on + strand, within BPHYT_RS09980 at 2272.258 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 2,270,716 - BPHYT_RS09970 0.53 +0.4 2,270,802 - BPHYT_RS09970 0.66 +0.4 2,270,949 + -1.2 2,270,950 - +1.1 2,271,603 - +0.0 2,271,983 + BPHYT_RS09980 0.56 -1.5 2,272,258 + -0.7
Or see this region's nucleotide sequence