Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08620 and BPHYT_RS08625 are separated by 136 nucleotides BPHYT_RS08625 and BPHYT_RS08630 are separated by 46 nucleotides
BPHYT_RS08620: BPHYT_RS08620 - epimerase, at 1,964,979 to 1,965,977
_RS08620
BPHYT_RS08625: BPHYT_RS08625 - TetR family transcriptional regulator, at 1,966,114 to 1,967,028
_RS08625
BPHYT_RS08630: BPHYT_RS08630 - 3-hydroxyisobutyryl-CoA hydrolase, at 1,967,075 to 1,968,199
_RS08630
Position (kb) 1966
1967
1968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1965.146 kb on - strand, within BPHYT_RS08620 at 1965.251 kb on - strand, within BPHYT_RS08620 at 1965.316 kb on + strand, within BPHYT_RS08620 at 1965.316 kb on + strand, within BPHYT_RS08620 at 1965.317 kb on - strand, within BPHYT_RS08620 at 1965.317 kb on - strand, within BPHYT_RS08620 at 1965.370 kb on + strand, within BPHYT_RS08620 at 1965.370 kb on + strand, within BPHYT_RS08620 at 1965.370 kb on + strand, within BPHYT_RS08620 at 1965.371 kb on - strand, within BPHYT_RS08620 at 1965.478 kb on + strand, within BPHYT_RS08620 at 1965.733 kb on + strand, within BPHYT_RS08620 at 1965.981 kb on + strand at 1965.981 kb on + strand at 1966.400 kb on - strand, within BPHYT_RS08625 at 1966.956 kb on + strand at 1967.121 kb on - strand at 1967.310 kb on - strand, within BPHYT_RS08630 at 1967.405 kb on + strand, within BPHYT_RS08630 at 1967.406 kb on - strand, within BPHYT_RS08630 at 1967.595 kb on - strand, within BPHYT_RS08630 at 1967.639 kb on + strand, within BPHYT_RS08630 at 1967.640 kb on - strand, within BPHYT_RS08630 at 1967.660 kb on + strand, within BPHYT_RS08630 at 1967.660 kb on + strand, within BPHYT_RS08630 at 1967.661 kb on - strand, within BPHYT_RS08630
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 1,965,146 - BPHYT_RS08620 0.17 +0.8 1,965,251 - BPHYT_RS08620 0.27 +1.6 1,965,316 + BPHYT_RS08620 0.34 +0.1 1,965,316 + BPHYT_RS08620 0.34 +0.0 1,965,317 - BPHYT_RS08620 0.34 -0.2 1,965,317 - BPHYT_RS08620 0.34 +0.5 1,965,370 + BPHYT_RS08620 0.39 +0.1 1,965,370 + BPHYT_RS08620 0.39 +1.4 1,965,370 + BPHYT_RS08620 0.39 -0.3 1,965,371 - BPHYT_RS08620 0.39 +0.6 1,965,478 + BPHYT_RS08620 0.50 +2.4 1,965,733 + BPHYT_RS08620 0.75 -0.1 1,965,981 + +0.4 1,965,981 + +0.5 1,966,400 - BPHYT_RS08625 0.31 -2.9 1,966,956 + +0.6 1,967,121 - +0.4 1,967,310 - BPHYT_RS08630 0.21 -0.8 1,967,405 + BPHYT_RS08630 0.29 -0.3 1,967,406 - BPHYT_RS08630 0.29 -1.0 1,967,595 - BPHYT_RS08630 0.46 -0.5 1,967,639 + BPHYT_RS08630 0.50 -0.3 1,967,640 - BPHYT_RS08630 0.50 +0.0 1,967,660 + BPHYT_RS08630 0.52 -0.5 1,967,660 + BPHYT_RS08630 0.52 -0.9 1,967,661 - BPHYT_RS08630 0.52 -0.7
Or see this region's nucleotide sequence