Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04025

Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04015 and BPHYT_RS04020 are separated by 31 nucleotidesBPHYT_RS04020 and BPHYT_RS04025 are separated by 185 nucleotidesBPHYT_RS04025 and BPHYT_RS04030 are separated by 220 nucleotides BPHYT_RS04015: BPHYT_RS04015 - glycosyl transferase, at 914,682 to 916,034 _RS04015 BPHYT_RS04020: BPHYT_RS04020 - hypothetical protein, at 916,066 to 916,572 _RS04020 BPHYT_RS04025: BPHYT_RS04025 - hypothetical protein, at 916,758 to 917,378 _RS04025 BPHYT_RS04030: BPHYT_RS04030 - oxidoreductase, at 917,599 to 919,338 _RS04030 Position (kb) 916 917 918Strain fitness (log2 ratio) -1 0 1at 916.104 kb on - strandat 916.116 kb on - strandat 916.697 kb on + strandat 916.698 kb on - strandat 916.723 kb on + strandat 917.616 kb on + strandat 917.682 kb on + strandat 917.957 kb on - strand, within BPHYT_RS04030at 918.374 kb on - strand, within BPHYT_RS04030

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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916,104 - +0.3
916,116 - -0.2
916,697 + +0.3
916,698 - +0.1
916,723 + +1.3
917,616 + -0.1
917,682 + +0.3
917,957 - BPHYT_RS04030 0.21 -0.1
918,374 - BPHYT_RS04030 0.45 +0.6

Or see this region's nucleotide sequence