Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03645 and BPHYT_RS03650 are separated by 45 nucleotides BPHYT_RS03650 and BPHYT_RS03655 are separated by 206 nucleotides
BPHYT_RS03645: BPHYT_RS03645 - tRNA dimethylallyltransferase, at 828,042 to 828,989
_RS03645
BPHYT_RS03650: BPHYT_RS03650 - DNA mismatch repair protein, at 829,035 to 831,098
_RS03650
BPHYT_RS03655: BPHYT_RS03655 - membrane protein, at 831,305 to 831,976
_RS03655
Position (kb) 829
830
831
832 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 828.196 kb on + strand, within BPHYT_RS03645 at 828.271 kb on - strand, within BPHYT_RS03645 at 828.474 kb on - strand, within BPHYT_RS03645 at 828.667 kb on + strand, within BPHYT_RS03645 at 828.978 kb on - strand at 829.084 kb on + strand at 829.085 kb on - strand at 829.258 kb on + strand, within BPHYT_RS03650 at 829.259 kb on - strand, within BPHYT_RS03650 at 829.508 kb on - strand, within BPHYT_RS03650 at 829.508 kb on - strand, within BPHYT_RS03650 at 829.576 kb on + strand, within BPHYT_RS03650 at 829.577 kb on - strand, within BPHYT_RS03650 at 829.577 kb on - strand, within BPHYT_RS03650 at 829.667 kb on - strand, within BPHYT_RS03650 at 830.183 kb on - strand, within BPHYT_RS03650 at 830.183 kb on - strand, within BPHYT_RS03650 at 830.240 kb on + strand, within BPHYT_RS03650 at 830.748 kb on - strand, within BPHYT_RS03650 at 831.019 kb on - strand at 831.109 kb on + strand at 831.110 kb on - strand at 831.152 kb on + strand at 831.192 kb on + strand at 831.193 kb on - strand at 831.293 kb on - strand at 831.318 kb on + strand at 831.567 kb on - strand, within BPHYT_RS03655 at 831.833 kb on + strand, within BPHYT_RS03655 at 831.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 828,196 + BPHYT_RS03645 0.16 -1.1 828,271 - BPHYT_RS03645 0.24 -1.1 828,474 - BPHYT_RS03645 0.46 -2.2 828,667 + BPHYT_RS03645 0.66 -1.3 828,978 - -0.5 829,084 + -0.3 829,085 - -0.1 829,258 + BPHYT_RS03650 0.11 +0.3 829,259 - BPHYT_RS03650 0.11 -0.0 829,508 - BPHYT_RS03650 0.23 +0.4 829,508 - BPHYT_RS03650 0.23 +0.1 829,576 + BPHYT_RS03650 0.26 -2.8 829,577 - BPHYT_RS03650 0.26 +0.7 829,577 - BPHYT_RS03650 0.26 +0.0 829,667 - BPHYT_RS03650 0.31 +1.2 830,183 - BPHYT_RS03650 0.56 +0.5 830,183 - BPHYT_RS03650 0.56 +1.4 830,240 + BPHYT_RS03650 0.58 -0.8 830,748 - BPHYT_RS03650 0.83 -0.8 831,019 - +2.1 831,109 + -0.5 831,110 - +1.1 831,152 + +1.2 831,192 + +0.2 831,193 - +0.9 831,293 - +0.3 831,318 + +0.5 831,567 - BPHYT_RS03655 0.39 +1.5 831,833 + BPHYT_RS03655 0.79 +0.3 831,983 - +1.1
Or see this region's nucleotide sequence