Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34590 and BPHYT_RS34595 are separated by 26 nucleotides BPHYT_RS34595 and BPHYT_RS34600 are separated by 12 nucleotides
BPHYT_RS34590: BPHYT_RS34590 - multidrug transporter, at 3,367,557 to 3,368,966
_RS34590
BPHYT_RS34595: BPHYT_RS34595 - multidrug transporter, at 3,368,993 to 3,372,187
_RS34595
BPHYT_RS34600: BPHYT_RS34600 - hemolysin D, at 3,372,200 to 3,373,447
_RS34600
Position (kb) 3368
3369
3370
3371
3372
3373 Strain fitness (log2 ratio) -1
0
1
2 at 3368.381 kb on + strand, within BPHYT_RS34590 at 3368.494 kb on + strand, within BPHYT_RS34590 at 3368.586 kb on - strand, within BPHYT_RS34590 at 3368.668 kb on + strand, within BPHYT_RS34590 at 3368.918 kb on - strand at 3369.354 kb on + strand, within BPHYT_RS34595 at 3369.354 kb on + strand, within BPHYT_RS34595 at 3369.456 kb on + strand, within BPHYT_RS34595 at 3369.507 kb on + strand, within BPHYT_RS34595 at 3369.507 kb on + strand, within BPHYT_RS34595 at 3369.507 kb on + strand, within BPHYT_RS34595 at 3369.508 kb on - strand, within BPHYT_RS34595 at 3369.541 kb on - strand, within BPHYT_RS34595 at 3369.800 kb on - strand, within BPHYT_RS34595 at 3369.800 kb on - strand, within BPHYT_RS34595 at 3369.800 kb on - strand, within BPHYT_RS34595 at 3369.803 kb on - strand, within BPHYT_RS34595 at 3369.834 kb on + strand, within BPHYT_RS34595 at 3369.835 kb on - strand, within BPHYT_RS34595 at 3369.835 kb on - strand, within BPHYT_RS34595 at 3369.888 kb on + strand, within BPHYT_RS34595 at 3369.888 kb on + strand, within BPHYT_RS34595 at 3369.931 kb on - strand, within BPHYT_RS34595 at 3370.402 kb on - strand, within BPHYT_RS34595 at 3370.560 kb on + strand, within BPHYT_RS34595 at 3370.573 kb on - strand, within BPHYT_RS34595 at 3370.573 kb on - strand, within BPHYT_RS34595 at 3371.122 kb on - strand, within BPHYT_RS34595 at 3371.122 kb on - strand, within BPHYT_RS34595 at 3371.122 kb on - strand, within BPHYT_RS34595 at 3371.144 kb on + strand, within BPHYT_RS34595 at 3371.663 kb on - strand, within BPHYT_RS34595 at 3371.958 kb on + strand at 3371.958 kb on + strand at 3371.959 kb on - strand at 3372.205 kb on + strand at 3372.783 kb on + strand, within BPHYT_RS34600 at 3372.783 kb on + strand, within BPHYT_RS34600 at 3373.140 kb on + strand, within BPHYT_RS34600
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 3,368,381 + BPHYT_RS34590 0.58 +0.7 3,368,494 + BPHYT_RS34590 0.66 -0.1 3,368,586 - BPHYT_RS34590 0.73 -0.8 3,368,668 + BPHYT_RS34590 0.79 +0.0 3,368,918 - +0.7 3,369,354 + BPHYT_RS34595 0.11 +0.1 3,369,354 + BPHYT_RS34595 0.11 -0.1 3,369,456 + BPHYT_RS34595 0.14 +1.0 3,369,507 + BPHYT_RS34595 0.16 -0.6 3,369,507 + BPHYT_RS34595 0.16 -0.6 3,369,507 + BPHYT_RS34595 0.16 -0.2 3,369,508 - BPHYT_RS34595 0.16 -0.6 3,369,541 - BPHYT_RS34595 0.17 -0.7 3,369,800 - BPHYT_RS34595 0.25 -0.4 3,369,800 - BPHYT_RS34595 0.25 +0.3 3,369,800 - BPHYT_RS34595 0.25 +0.6 3,369,803 - BPHYT_RS34595 0.25 +0.0 3,369,834 + BPHYT_RS34595 0.26 -0.4 3,369,835 - BPHYT_RS34595 0.26 +0.9 3,369,835 - BPHYT_RS34595 0.26 +0.7 3,369,888 + BPHYT_RS34595 0.28 +0.0 3,369,888 + BPHYT_RS34595 0.28 -0.8 3,369,931 - BPHYT_RS34595 0.29 +0.3 3,370,402 - BPHYT_RS34595 0.44 +0.3 3,370,560 + BPHYT_RS34595 0.49 +1.1 3,370,573 - BPHYT_RS34595 0.49 -0.9 3,370,573 - BPHYT_RS34595 0.49 -0.3 3,371,122 - BPHYT_RS34595 0.67 +0.0 3,371,122 - BPHYT_RS34595 0.67 +0.2 3,371,122 - BPHYT_RS34595 0.67 +0.2 3,371,144 + BPHYT_RS34595 0.67 +0.2 3,371,663 - BPHYT_RS34595 0.84 -0.0 3,371,958 + +2.3 3,371,958 + -0.1 3,371,959 - +0.1 3,372,205 + -1.5 3,372,783 + BPHYT_RS34600 0.47 +0.3 3,372,783 + BPHYT_RS34600 0.47 -0.3 3,373,140 + BPHYT_RS34600 0.75 +0.7
Or see this region's nucleotide sequence