Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26135

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26130 and BPHYT_RS26135 are separated by 2 nucleotidesBPHYT_RS26135 and BPHYT_RS26140 are separated by 142 nucleotides BPHYT_RS26130: BPHYT_RS26130 - ABC transporter permease, at 1,437,939 to 1,438,853 _RS26130 BPHYT_RS26135: BPHYT_RS26135 - ABC transporter permease, at 1,438,856 to 1,439,761 _RS26135 BPHYT_RS26140: BPHYT_RS26140 - acyl-CoA dehydrogenase, at 1,439,904 to 1,441,184 _RS26140 Position (kb) 1438 1439 1440Strain fitness (log2 ratio) -1 0 1at 1437.914 kb on + strandat 1438.264 kb on - strand, within BPHYT_RS26130at 1438.690 kb on + strand, within BPHYT_RS26130at 1438.905 kb on - strandat 1439.327 kb on + strand, within BPHYT_RS26135at 1439.328 kb on - strand, within BPHYT_RS26135at 1440.412 kb on - strand, within BPHYT_RS26140at 1440.640 kb on - strand, within BPHYT_RS26140at 1440.640 kb on - strand, within BPHYT_RS26140

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
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1,437,914 + +0.7
1,438,264 - BPHYT_RS26130 0.36 +0.4
1,438,690 + BPHYT_RS26130 0.82 -0.5
1,438,905 - -0.5
1,439,327 + BPHYT_RS26135 0.52 -1.2
1,439,328 - BPHYT_RS26135 0.52 -1.1
1,440,412 - BPHYT_RS26140 0.40 +0.4
1,440,640 - BPHYT_RS26140 0.57 +1.0
1,440,640 - BPHYT_RS26140 0.57 +1.4

Or see this region's nucleotide sequence