Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24280 and BPHYT_RS24285 are separated by 134 nucleotides BPHYT_RS24285 and BPHYT_RS24290 are separated by 92 nucleotides BPHYT_RS24290 and BPHYT_RS24295 are separated by 476 nucleotides
BPHYT_RS24280: BPHYT_RS24280 - DSBA oxidoreductase, at 1,013,303 to 1,014,844
_RS24280
BPHYT_RS24285: BPHYT_RS24285 - TetR family transcriptional regulator, at 1,014,979 to 1,015,704
_RS24285
BPHYT_RS24290: BPHYT_RS24290 - hypothetical protein, at 1,015,797 to 1,016,516
_RS24290
BPHYT_RS24295: BPHYT_RS24295 - response regulator receiver, at 1,016,993 to 1,017,505
_RS24295
Position (kb) 1015
1016
1017 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1015.037 kb on + strand at 1015.222 kb on + strand, within BPHYT_RS24285 at 1015.223 kb on - strand, within BPHYT_RS24285 at 1015.764 kb on - strand at 1015.858 kb on + strand at 1015.858 kb on + strand at 1016.423 kb on + strand, within BPHYT_RS24290 at 1016.423 kb on + strand, within BPHYT_RS24290 at 1016.424 kb on - strand, within BPHYT_RS24290 at 1016.424 kb on - strand, within BPHYT_RS24290 at 1016.424 kb on - strand, within BPHYT_RS24290 at 1016.445 kb on + strand at 1016.445 kb on + strand at 1016.446 kb on - strand at 1016.704 kb on - strand at 1016.704 kb on - strand at 1016.706 kb on + strand at 1016.706 kb on + strand at 1016.707 kb on - strand at 1016.707 kb on - strand at 1016.943 kb on + strand at 1017.302 kb on + strand, within BPHYT_RS24295
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 1,015,037 + -0.2 1,015,222 + BPHYT_RS24285 0.33 -2.6 1,015,223 - BPHYT_RS24285 0.34 +0.8 1,015,764 - -1.8 1,015,858 + -0.2 1,015,858 + -0.0 1,016,423 + BPHYT_RS24290 0.87 +0.9 1,016,423 + BPHYT_RS24290 0.87 +0.6 1,016,424 - BPHYT_RS24290 0.87 -0.8 1,016,424 - BPHYT_RS24290 0.87 +0.6 1,016,424 - BPHYT_RS24290 0.87 +0.4 1,016,445 + -0.7 1,016,445 + -0.8 1,016,446 - +0.1 1,016,704 - -0.3 1,016,704 - +0.0 1,016,706 + +0.5 1,016,706 + +4.2 1,016,707 - -0.8 1,016,707 - +0.9 1,016,943 + +0.1 1,017,302 + BPHYT_RS24295 0.60 -0.1
Or see this region's nucleotide sequence