Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23295 and BPHYT_RS23300 are separated by 52 nucleotides BPHYT_RS23300 and BPHYT_RS23305 are separated by 45 nucleotides BPHYT_RS23305 and BPHYT_RS23310 are separated by 145 nucleotides
BPHYT_RS23295: BPHYT_RS23295 - O-methyltransferase, at 789,734 to 790,348
_RS23295
BPHYT_RS23300: BPHYT_RS23300 - IclR family transcriptional regulator, at 790,401 to 791,012
_RS23300
BPHYT_RS23305: BPHYT_RS23305 - hypothetical protein, at 791,058 to 791,600
_RS23305
BPHYT_RS23310: BPHYT_RS23310 - hypothetical protein, at 791,746 to 792,558
_RS23310
Position (kb) 791
792 Strain fitness (log2 ratio) -1
0
1
2
3 at 790.070 kb on + strand, within BPHYT_RS23295 at 790.071 kb on - strand, within BPHYT_RS23295 at 790.071 kb on - strand, within BPHYT_RS23295 at 790.163 kb on + strand, within BPHYT_RS23295 at 790.164 kb on - strand, within BPHYT_RS23295 at 790.164 kb on - strand, within BPHYT_RS23295 at 790.228 kb on + strand, within BPHYT_RS23295 at 790.229 kb on - strand, within BPHYT_RS23295 at 791.025 kb on + strand at 791.026 kb on - strand at 791.080 kb on + strand at 791.202 kb on - strand, within BPHYT_RS23305 at 791.314 kb on + strand, within BPHYT_RS23305 at 791.314 kb on + strand, within BPHYT_RS23305 at 791.496 kb on - strand, within BPHYT_RS23305 at 791.721 kb on + strand at 791.722 kb on - strand at 791.724 kb on - strand at 791.774 kb on + strand at 791.775 kb on - strand at 791.903 kb on - strand, within BPHYT_RS23310 at 792.082 kb on + strand, within BPHYT_RS23310 at 792.181 kb on + strand, within BPHYT_RS23310 at 792.218 kb on - strand, within BPHYT_RS23310 at 792.590 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 790,070 + BPHYT_RS23295 0.55 +0.7 790,071 - BPHYT_RS23295 0.55 -0.5 790,071 - BPHYT_RS23295 0.55 +3.7 790,163 + BPHYT_RS23295 0.70 -1.7 790,164 - BPHYT_RS23295 0.70 +0.5 790,164 - BPHYT_RS23295 0.70 -0.3 790,228 + BPHYT_RS23295 0.80 +0.0 790,229 - BPHYT_RS23295 0.80 -0.1 791,025 + +0.3 791,026 - -0.0 791,080 + -0.3 791,202 - BPHYT_RS23305 0.27 -0.1 791,314 + BPHYT_RS23305 0.47 -0.8 791,314 + BPHYT_RS23305 0.47 -0.0 791,496 - BPHYT_RS23305 0.81 +2.5 791,721 + +0.8 791,722 - +1.4 791,724 - +0.2 791,774 + -0.8 791,775 - -1.4 791,903 - BPHYT_RS23310 0.19 -0.2 792,082 + BPHYT_RS23310 0.41 +1.3 792,181 + BPHYT_RS23310 0.54 -0.1 792,218 - BPHYT_RS23310 0.58 +0.0 792,590 + -0.5
Or see this region's nucleotide sequence