Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22460 and BPHYT_RS22465 are separated by 291 nucleotides BPHYT_RS22465 and BPHYT_RS22470 overlap by 4 nucleotides BPHYT_RS22470 and BPHYT_RS22475 are separated by 169 nucleotides
BPHYT_RS22460: BPHYT_RS22460 - phosphonate ABC transporter ATP-binidng protein, at 594,255 to 595,160
_RS22460
BPHYT_RS22465: BPHYT_RS22465 - zinc carboxypeptidase-like protein, at 595,452 to 596,486
_RS22465
BPHYT_RS22470: BPHYT_RS22470 - hydrolase, at 596,483 to 597,283
_RS22470
BPHYT_RS22475: BPHYT_RS22475 - NAD-glutamate dehydrogenase, at 597,453 to 602,294
_RS22475
Position (kb) 595
596
597 Strain fitness (log2 ratio) -1
0
1 at 595.165 kb on - strand at 595.268 kb on - strand at 595.268 kb on - strand at 595.393 kb on + strand at 595.838 kb on + strand, within BPHYT_RS22465 at 596.145 kb on + strand, within BPHYT_RS22465 at 596.172 kb on + strand, within BPHYT_RS22465 at 596.176 kb on + strand, within BPHYT_RS22465 at 596.467 kb on - strand at 596.468 kb on + strand at 596.482 kb on + strand at 596.816 kb on - strand, within BPHYT_RS22470 at 597.325 kb on + strand at 597.371 kb on + strand at 597.371 kb on + strand at 597.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 595,165 - +0.6 595,268 - -0.1 595,268 - +1.5 595,393 + +0.1 595,838 + BPHYT_RS22465 0.37 +0.6 596,145 + BPHYT_RS22465 0.67 +0.5 596,172 + BPHYT_RS22465 0.70 -0.3 596,176 + BPHYT_RS22465 0.70 +0.1 596,467 - +1.4 596,468 + +0.4 596,482 + -0.5 596,816 - BPHYT_RS22470 0.42 +0.1 597,325 + -1.5 597,371 + -0.3 597,371 + +0.2 597,372 - -1.4
Or see this region's nucleotide sequence