Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19725 and BPHYT_RS19730 are separated by 49 nucleotides BPHYT_RS19730 and BPHYT_RS19735 are separated by 258 nucleotides
BPHYT_RS19725: BPHYT_RS19725 - arabinose ABC transporter permease, at 4,438,704 to 4,439,708
_RS19725
BPHYT_RS19730: BPHYT_RS19730 - L-arabonate dehydratase (EC 4.2.1.25) <small>(from data)</small>, at 4,439,758 to 4,441,491
_RS19730
BPHYT_RS19735: BPHYT_RS19735 - hypothetical protein, at 4,441,750 to 4,442,088
_RS19735
Position (kb) 4439
4440
4441
4442 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4438.776 kb on - strand at 4439.025 kb on - strand, within BPHYT_RS19725 at 4439.163 kb on + strand, within BPHYT_RS19725 at 4439.245 kb on - strand, within BPHYT_RS19725 at 4439.343 kb on - strand, within BPHYT_RS19725 at 4439.401 kb on + strand, within BPHYT_RS19725 at 4439.402 kb on - strand, within BPHYT_RS19725 at 4439.451 kb on - strand, within BPHYT_RS19725 at 4439.617 kb on + strand at 4439.628 kb on + strand at 4439.629 kb on - strand at 4439.634 kb on + strand at 4439.639 kb on + strand at 4439.640 kb on - strand at 4439.718 kb on + strand at 4439.718 kb on + strand at 4439.718 kb on + strand at 4439.719 kb on - strand at 4439.719 kb on - strand at 4439.719 kb on - strand at 4439.779 kb on - strand at 4439.835 kb on - strand at 4439.963 kb on - strand, within BPHYT_RS19730 at 4440.706 kb on + strand, within BPHYT_RS19730 at 4440.707 kb on - strand, within BPHYT_RS19730 at 4440.725 kb on - strand, within BPHYT_RS19730 at 4440.728 kb on - strand, within BPHYT_RS19730 at 4441.100 kb on + strand, within BPHYT_RS19730 at 4441.122 kb on + strand, within BPHYT_RS19730 at 4441.122 kb on + strand, within BPHYT_RS19730 at 4441.123 kb on - strand, within BPHYT_RS19730 at 4441.387 kb on + strand at 4441.390 kb on + strand at 4441.391 kb on - strand at 4441.391 kb on - strand at 4441.400 kb on - strand at 4441.400 kb on - strand at 4441.503 kb on + strand at 4441.637 kb on + strand at 4441.682 kb on - strand at 4441.751 kb on + strand at 4441.792 kb on - strand, within BPHYT_RS19735 at 4441.953 kb on + strand, within BPHYT_RS19735 at 4441.973 kb on + strand, within BPHYT_RS19735 at 4442.125 kb on - strand at 4442.125 kb on - strand at 4442.125 kb on - strand at 4442.128 kb on + strand at 4442.129 kb on - strand at 4442.129 kb on - strand at 4442.266 kb on + strand at 4442.343 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 4,438,776 - +0.3 4,439,025 - BPHYT_RS19725 0.32 -0.6 4,439,163 + BPHYT_RS19725 0.46 +0.8 4,439,245 - BPHYT_RS19725 0.54 -0.3 4,439,343 - BPHYT_RS19725 0.64 +2.2 4,439,401 + BPHYT_RS19725 0.69 +0.9 4,439,402 - BPHYT_RS19725 0.69 +0.9 4,439,451 - BPHYT_RS19725 0.74 +1.4 4,439,617 + -0.3 4,439,628 + +0.5 4,439,629 - +3.2 4,439,634 + -0.3 4,439,639 + -1.0 4,439,640 - +0.0 4,439,718 + +0.0 4,439,718 + +1.0 4,439,718 + +0.4 4,439,719 - -1.0 4,439,719 - -0.6 4,439,719 - -0.2 4,439,779 - +1.1 4,439,835 - +1.0 4,439,963 - BPHYT_RS19730 0.12 -0.8 4,440,706 + BPHYT_RS19730 0.55 +1.3 4,440,707 - BPHYT_RS19730 0.55 +0.3 4,440,725 - BPHYT_RS19730 0.56 +0.8 4,440,728 - BPHYT_RS19730 0.56 +0.2 4,441,100 + BPHYT_RS19730 0.77 -0.3 4,441,122 + BPHYT_RS19730 0.79 -0.3 4,441,122 + BPHYT_RS19730 0.79 -0.0 4,441,123 - BPHYT_RS19730 0.79 -0.6 4,441,387 + -0.4 4,441,390 + -0.8 4,441,391 - -2.9 4,441,391 - +1.1 4,441,400 - -0.1 4,441,400 - +0.3 4,441,503 + +1.1 4,441,637 + -0.8 4,441,682 - +0.4 4,441,751 + -0.2 4,441,792 - BPHYT_RS19735 0.12 +1.4 4,441,953 + BPHYT_RS19735 0.60 +0.2 4,441,973 + BPHYT_RS19735 0.66 +0.3 4,442,125 - -0.2 4,442,125 - -0.0 4,442,125 - -0.0 4,442,128 + +0.3 4,442,129 - -0.4 4,442,129 - -0.8 4,442,266 + +0.5 4,442,343 + -0.7
Or see this region's nucleotide sequence