Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17940 and BPHYT_RS17945 are separated by 189 nucleotides BPHYT_RS17945 and BPHYT_RS17950 are separated by 4 nucleotides
BPHYT_RS17940: BPHYT_RS17940 - sulfoxide reductase catalytic subunit YedY, at 4,050,358 to 4,051,353
_RS17940
BPHYT_RS17945: BPHYT_RS17945 - cytochrome C biogenesis protein, at 4,051,543 to 4,052,748
_RS17945
BPHYT_RS17950: BPHYT_RS17950 - cytochrome C biogenesis protein ResB, at 4,052,753 to 4,054,966
_RS17950
Position (kb) 4051
4052
4053 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4050.551 kb on + strand, within BPHYT_RS17940 at 4050.551 kb on + strand, within BPHYT_RS17940 at 4050.551 kb on + strand, within BPHYT_RS17940 at 4050.551 kb on + strand, within BPHYT_RS17940 at 4050.551 kb on + strand, within BPHYT_RS17940 at 4050.551 kb on + strand, within BPHYT_RS17940 at 4050.552 kb on - strand, within BPHYT_RS17940 at 4050.552 kb on - strand, within BPHYT_RS17940 at 4050.552 kb on - strand, within BPHYT_RS17940 at 4050.552 kb on - strand, within BPHYT_RS17940 at 4050.555 kb on + strand, within BPHYT_RS17940 at 4050.555 kb on + strand, within BPHYT_RS17940 at 4050.555 kb on + strand, within BPHYT_RS17940 at 4050.627 kb on - strand, within BPHYT_RS17940 at 4050.749 kb on + strand, within BPHYT_RS17940 at 4050.821 kb on + strand, within BPHYT_RS17940 at 4050.821 kb on + strand, within BPHYT_RS17940 at 4050.822 kb on - strand, within BPHYT_RS17940 at 4050.822 kb on - strand, within BPHYT_RS17940 at 4050.822 kb on - strand, within BPHYT_RS17940 at 4050.923 kb on + strand, within BPHYT_RS17940 at 4050.923 kb on + strand, within BPHYT_RS17940 at 4050.924 kb on - strand, within BPHYT_RS17940 at 4050.971 kb on + strand, within BPHYT_RS17940 at 4050.971 kb on + strand at 4050.971 kb on + strand, within BPHYT_RS17940 at 4050.972 kb on - strand, within BPHYT_RS17940 at 4051.076 kb on + strand, within BPHYT_RS17940 at 4051.088 kb on + strand, within BPHYT_RS17940 at 4051.088 kb on + strand, within BPHYT_RS17940 at 4051.089 kb on - strand, within BPHYT_RS17940 at 4051.089 kb on - strand, within BPHYT_RS17940 at 4051.089 kb on - strand, within BPHYT_RS17940 at 4051.089 kb on - strand, within BPHYT_RS17940 at 4051.106 kb on + strand, within BPHYT_RS17940 at 4051.106 kb on + strand, within BPHYT_RS17940 at 4051.187 kb on + strand, within BPHYT_RS17940 at 4051.188 kb on - strand, within BPHYT_RS17940 at 4051.431 kb on + strand at 4051.431 kb on + strand at 4051.432 kb on - strand at 4051.470 kb on + strand at 4051.471 kb on - strand at 4051.484 kb on + strand at 4051.519 kb on + strand at 4051.541 kb on + strand at 4051.542 kb on - strand at 4052.574 kb on - strand, within BPHYT_RS17945 at 4052.856 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 4,050,551 + BPHYT_RS17940 0.19 -1.0 4,050,551 + BPHYT_RS17940 0.19 -0.2 4,050,551 + BPHYT_RS17940 0.19 -0.0 4,050,551 + BPHYT_RS17940 0.19 -0.1 4,050,551 + BPHYT_RS17940 0.19 +0.7 4,050,551 + BPHYT_RS17940 0.19 -0.5 4,050,552 - BPHYT_RS17940 0.19 -0.6 4,050,552 - BPHYT_RS17940 0.19 +0.7 4,050,552 - BPHYT_RS17940 0.19 +0.5 4,050,552 - BPHYT_RS17940 0.19 +0.6 4,050,555 + BPHYT_RS17940 0.20 +0.9 4,050,555 + BPHYT_RS17940 0.20 -0.8 4,050,555 + BPHYT_RS17940 0.20 -0.5 4,050,627 - BPHYT_RS17940 0.27 -0.2 4,050,749 + BPHYT_RS17940 0.39 -0.4 4,050,821 + BPHYT_RS17940 0.46 -0.8 4,050,821 + BPHYT_RS17940 0.46 -0.6 4,050,822 - BPHYT_RS17940 0.47 +0.4 4,050,822 - BPHYT_RS17940 0.47 +0.6 4,050,822 - BPHYT_RS17940 0.47 -0.1 4,050,923 + BPHYT_RS17940 0.57 +0.6 4,050,923 + BPHYT_RS17940 0.57 +0.0 4,050,924 - BPHYT_RS17940 0.57 +1.4 4,050,971 + BPHYT_RS17940 0.62 -0.1 4,050,971 + +1.1 4,050,971 + BPHYT_RS17940 0.62 +0.7 4,050,972 - BPHYT_RS17940 0.62 -0.3 4,051,076 + BPHYT_RS17940 0.72 -0.3 4,051,088 + BPHYT_RS17940 0.73 -1.1 4,051,088 + BPHYT_RS17940 0.73 -0.4 4,051,089 - BPHYT_RS17940 0.73 -0.9 4,051,089 - BPHYT_RS17940 0.73 +0.6 4,051,089 - BPHYT_RS17940 0.73 -0.0 4,051,089 - BPHYT_RS17940 0.73 +0.6 4,051,106 + BPHYT_RS17940 0.75 -0.6 4,051,106 + BPHYT_RS17940 0.75 +0.2 4,051,187 + BPHYT_RS17940 0.83 +1.9 4,051,188 - BPHYT_RS17940 0.83 +0.8 4,051,431 + +0.3 4,051,431 + +0.0 4,051,432 - +1.2 4,051,470 + +0.5 4,051,471 - -0.2 4,051,484 + -0.3 4,051,519 + -0.3 4,051,541 + +0.9 4,051,542 - -0.6 4,052,574 - BPHYT_RS17945 0.85 -4.9 4,052,856 - +1.9
Or see this region's nucleotide sequence