Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10655

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10650 and BPHYT_RS10655 are separated by 169 nucleotidesBPHYT_RS10655 and BPHYT_RS10660 are separated by 163 nucleotides BPHYT_RS10650: BPHYT_RS10650 - membrane protein, at 2,426,115 to 2,426,846 _RS10650 BPHYT_RS10655: BPHYT_RS10655 - LysR family transcriptional regulator, at 2,427,016 to 2,427,900 _RS10655 BPHYT_RS10660: BPHYT_RS10660 - ferredoxin, at 2,428,064 to 2,429,038 _RS10660 Position (kb) 2427 2428Strain fitness (log2 ratio) -1 0 1 2at 2426.055 kb on + strandat 2426.166 kb on - strandat 2426.527 kb on + strand, within BPHYT_RS10650at 2426.928 kb on + strandat 2426.929 kb on - strandat 2426.934 kb on - strandat 2427.001 kb on + strandat 2427.001 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
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2,426,055 + +0.6
2,426,166 - +0.4
2,426,527 + BPHYT_RS10650 0.56 +0.0
2,426,928 + +2.3
2,426,929 - -0.5
2,426,934 - -0.4
2,427,001 + +0.4
2,427,001 + -0.0

Or see this region's nucleotide sequence