Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08270 and BPHYT_RS08275 are separated by 135 nucleotides BPHYT_RS08275 and BPHYT_RS08280 are separated by 159 nucleotides
BPHYT_RS08270: BPHYT_RS08270 - long-chain fatty acid--CoA ligase, at 1,888,223 to 1,890,028
_RS08270
BPHYT_RS08275: BPHYT_RS08275 - acetyl-CoA acetyltransferase, at 1,890,164 to 1,891,465
_RS08275
BPHYT_RS08280: BPHYT_RS08280 - acyl dehydratase, at 1,891,625 to 1,892,569
_RS08280
Position (kb) 1890
1891
1892 Strain fitness (log2 ratio) -1
0
1
2 at 1889.280 kb on + strand, within BPHYT_RS08270 at 1889.603 kb on - strand, within BPHYT_RS08270 at 1889.604 kb on + strand, within BPHYT_RS08270 at 1889.677 kb on + strand, within BPHYT_RS08270 at 1889.678 kb on - strand, within BPHYT_RS08270 at 1889.733 kb on + strand, within BPHYT_RS08270 at 1889.772 kb on + strand, within BPHYT_RS08270 at 1889.772 kb on + strand, within BPHYT_RS08270 at 1889.773 kb on - strand, within BPHYT_RS08270 at 1890.341 kb on + strand, within BPHYT_RS08275 at 1890.400 kb on - strand, within BPHYT_RS08275 at 1890.400 kb on - strand, within BPHYT_RS08275 at 1890.590 kb on + strand, within BPHYT_RS08275 at 1890.590 kb on + strand, within BPHYT_RS08275 at 1890.591 kb on - strand, within BPHYT_RS08275 at 1890.591 kb on - strand, within BPHYT_RS08275 at 1890.591 kb on - strand, within BPHYT_RS08275 at 1890.856 kb on - strand, within BPHYT_RS08275 at 1891.200 kb on + strand, within BPHYT_RS08275 at 1891.201 kb on - strand, within BPHYT_RS08275 at 1891.324 kb on - strand, within BPHYT_RS08275 at 1891.498 kb on - strand at 1892.289 kb on + strand, within BPHYT_RS08280 at 1892.405 kb on + strand, within BPHYT_RS08280 at 1892.405 kb on + strand, within BPHYT_RS08280 at 1892.455 kb on - strand, within BPHYT_RS08280
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 1,889,280 + BPHYT_RS08270 0.59 -0.1 1,889,603 - BPHYT_RS08270 0.76 +0.4 1,889,604 + BPHYT_RS08270 0.76 -0.2 1,889,677 + BPHYT_RS08270 0.81 -1.1 1,889,678 - BPHYT_RS08270 0.81 +0.8 1,889,733 + BPHYT_RS08270 0.84 +2.0 1,889,772 + BPHYT_RS08270 0.86 +0.6 1,889,772 + BPHYT_RS08270 0.86 +0.4 1,889,773 - BPHYT_RS08270 0.86 -0.5 1,890,341 + BPHYT_RS08275 0.14 -0.5 1,890,400 - BPHYT_RS08275 0.18 +0.3 1,890,400 - BPHYT_RS08275 0.18 +1.0 1,890,590 + BPHYT_RS08275 0.33 +0.4 1,890,590 + BPHYT_RS08275 0.33 -1.3 1,890,591 - BPHYT_RS08275 0.33 +0.7 1,890,591 - BPHYT_RS08275 0.33 -0.1 1,890,591 - BPHYT_RS08275 0.33 -0.1 1,890,856 - BPHYT_RS08275 0.53 +2.4 1,891,200 + BPHYT_RS08275 0.80 +0.3 1,891,201 - BPHYT_RS08275 0.80 -0.7 1,891,324 - BPHYT_RS08275 0.89 +0.3 1,891,498 - +1.2 1,892,289 + BPHYT_RS08280 0.70 +0.5 1,892,405 + BPHYT_RS08280 0.83 -0.8 1,892,405 + BPHYT_RS08280 0.83 -0.4 1,892,455 - BPHYT_RS08280 0.88 +0.5
Or see this region's nucleotide sequence