Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07260 and BPHYT_RS07265 are separated by 30 nucleotides BPHYT_RS07265 and BPHYT_RS07270 are separated by 14 nucleotides BPHYT_RS07270 and BPHYT_RS07275 are separated by 67 nucleotides
BPHYT_RS07255: BPHYT_RS07255 - 4-oxalocrotonate decarboxylase, at 1,647,470 to 1,648,243
_RS07255
BPHYT_RS07260: BPHYT_RS07260 - 2-aminomuconate deaminase, at 1,648,240 to 1,648,671
_RS07260
BPHYT_RS07265: BPHYT_RS07265 - 3-hydroxyanthranilate 3,4-dioxygenase, at 1,648,702 to 1,649,226
_RS07265
BPHYT_RS07270: BPHYT_RS07270 - aminocarboxymuconate-semialdehyde decarboxylase, at 1,649,241 to 1,650,263
_RS07270
BPHYT_RS07275: BPHYT_RS07275 - kynureninase, at 1,650,331 to 1,651,560
_RS07275
Position (kb) 1649
1650
1651 Strain fitness (log2 ratio) -1
0
1
2 at 1648.669 kb on + strand at 1649.016 kb on - strand, within BPHYT_RS07265 at 1650.718 kb on + strand, within BPHYT_RS07275 at 1650.991 kb on + strand, within BPHYT_RS07275 at 1651.115 kb on - strand, within BPHYT_RS07275
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 1,648,669 + +0.1 1,649,016 - BPHYT_RS07265 0.60 +1.8 1,650,718 + BPHYT_RS07275 0.31 +0.3 1,650,991 + BPHYT_RS07275 0.54 +0.4 1,651,115 - BPHYT_RS07275 0.64 -0.2
Or see this region's nucleotide sequence