Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06515 and BPHYT_RS06520 are separated by 36 nucleotides BPHYT_RS06520 and BPHYT_RS06525 are separated by 368 nucleotides BPHYT_RS06525 and BPHYT_RS06530 are separated by 16 nucleotides
BPHYT_RS06515: BPHYT_RS06515 - GDP-mannose-dependent alpha-mannosyltransferase, at 1,480,363 to 1,481,394
_RS06515
BPHYT_RS06520: BPHYT_RS06520 - ser/threonine protein phosphatase, at 1,481,431 to 1,482,372
_RS06520
BPHYT_RS06525: BPHYT_RS06525 - membrane protein, at 1,482,741 to 1,483,265
_RS06525
BPHYT_RS06530: BPHYT_RS06530 - membrane protein, at 1,483,282 to 1,484,040
_RS06530
Position (kb) 1481
1482
1483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1480.676 kb on + strand, within BPHYT_RS06515 at 1480.716 kb on - strand, within BPHYT_RS06515 at 1481.028 kb on - strand, within BPHYT_RS06515 at 1481.028 kb on - strand, within BPHYT_RS06515 at 1481.028 kb on - strand, within BPHYT_RS06515 at 1481.067 kb on - strand, within BPHYT_RS06515 at 1481.067 kb on - strand, within BPHYT_RS06515 at 1481.194 kb on - strand, within BPHYT_RS06515 at 1481.410 kb on - strand at 1481.432 kb on + strand at 1481.433 kb on - strand at 1481.489 kb on + strand at 1481.513 kb on + strand at 1481.564 kb on + strand, within BPHYT_RS06520 at 1481.587 kb on + strand, within BPHYT_RS06520 at 1481.711 kb on + strand, within BPHYT_RS06520 at 1481.792 kb on + strand, within BPHYT_RS06520 at 1481.978 kb on + strand, within BPHYT_RS06520 at 1481.978 kb on + strand, within BPHYT_RS06520 at 1481.979 kb on - strand, within BPHYT_RS06520 at 1482.083 kb on - strand, within BPHYT_RS06520 at 1482.098 kb on + strand, within BPHYT_RS06520 at 1482.099 kb on - strand, within BPHYT_RS06520 at 1482.099 kb on - strand, within BPHYT_RS06520 at 1482.105 kb on - strand, within BPHYT_RS06520 at 1482.141 kb on - strand, within BPHYT_RS06520 at 1482.401 kb on - strand at 1482.450 kb on - strand at 1482.452 kb on + strand at 1482.567 kb on - strand at 1482.932 kb on - strand, within BPHYT_RS06525 at 1482.932 kb on - strand, within BPHYT_RS06525 at 1482.932 kb on - strand, within BPHYT_RS06525 at 1483.045 kb on + strand, within BPHYT_RS06525 at 1483.045 kb on + strand, within BPHYT_RS06525 at 1483.045 kb on + strand, within BPHYT_RS06525 at 1483.045 kb on + strand, within BPHYT_RS06525 at 1483.133 kb on - strand, within BPHYT_RS06525 at 1483.174 kb on + strand, within BPHYT_RS06525 at 1483.175 kb on - strand, within BPHYT_RS06525 at 1483.210 kb on - strand, within BPHYT_RS06525
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 1,480,676 + BPHYT_RS06515 0.30 +0.3 1,480,716 - BPHYT_RS06515 0.34 +2.0 1,481,028 - BPHYT_RS06515 0.64 +0.5 1,481,028 - BPHYT_RS06515 0.64 +0.4 1,481,028 - BPHYT_RS06515 0.64 +1.4 1,481,067 - BPHYT_RS06515 0.68 +0.9 1,481,067 - BPHYT_RS06515 0.68 -0.5 1,481,194 - BPHYT_RS06515 0.81 +0.8 1,481,410 - +0.0 1,481,432 + -0.3 1,481,433 - -0.6 1,481,489 + -0.4 1,481,513 + -0.1 1,481,564 + BPHYT_RS06520 0.14 -1.7 1,481,587 + BPHYT_RS06520 0.17 +0.1 1,481,711 + BPHYT_RS06520 0.30 +1.5 1,481,792 + BPHYT_RS06520 0.38 +0.2 1,481,978 + BPHYT_RS06520 0.58 -0.2 1,481,978 + BPHYT_RS06520 0.58 -1.0 1,481,979 - BPHYT_RS06520 0.58 -0.2 1,482,083 - BPHYT_RS06520 0.69 -0.0 1,482,098 + BPHYT_RS06520 0.71 +0.7 1,482,099 - BPHYT_RS06520 0.71 +0.1 1,482,099 - BPHYT_RS06520 0.71 +0.1 1,482,105 - BPHYT_RS06520 0.72 -0.2 1,482,141 - BPHYT_RS06520 0.75 +0.0 1,482,401 - -0.5 1,482,450 - +1.0 1,482,452 + +1.5 1,482,567 - -0.9 1,482,932 - BPHYT_RS06525 0.36 -0.0 1,482,932 - BPHYT_RS06525 0.36 -3.0 1,482,932 - BPHYT_RS06525 0.36 -0.8 1,483,045 + BPHYT_RS06525 0.58 -0.5 1,483,045 + BPHYT_RS06525 0.58 -0.1 1,483,045 + BPHYT_RS06525 0.58 +1.7 1,483,045 + BPHYT_RS06525 0.58 +1.1 1,483,133 - BPHYT_RS06525 0.75 -1.1 1,483,174 + BPHYT_RS06525 0.82 +0.5 1,483,175 - BPHYT_RS06525 0.83 +0.4 1,483,210 - BPHYT_RS06525 0.89 -1.3
Or see this region's nucleotide sequence