Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06490 and BPHYT_RS06495 are separated by 164 nucleotides BPHYT_RS06495 and BPHYT_RS06500 are separated by 32 nucleotides BPHYT_RS06500 and BPHYT_RS06505 are separated by 2 nucleotides BPHYT_RS06505 and BPHYT_RS06510 are separated by 205 nucleotides
BPHYT_RS06490: BPHYT_RS06490 - membrane protein, at 1,476,613 to 1,477,242
_RS06490
BPHYT_RS06495: BPHYT_RS06495 - glucose-1-dehydrogenase, at 1,477,407 to 1,478,153
_RS06495
BPHYT_RS06500: BPHYT_RS06500 - LOG family protein, at 1,478,186 to 1,478,770
_RS06500
BPHYT_RS06505: BPHYT_RS06505 - TetR family transcriptional regulator, at 1,478,773 to 1,479,498
_RS06505
BPHYT_RS06510: BPHYT_RS06510 - DeoR faimly transcriptional regulator, at 1,479,704 to 1,480,192
_RS06510
Position (kb) 1478
1479 Strain fitness (log2 ratio) -1
0
1 at 1477.261 kb on + strand at 1477.261 kb on + strand at 1477.408 kb on + strand at 1477.408 kb on + strand at 1477.447 kb on + strand at 1477.473 kb on + strand at 1477.473 kb on + strand at 1477.474 kb on - strand at 1477.474 kb on - strand at 1477.474 kb on - strand at 1477.658 kb on + strand, within BPHYT_RS06495 at 1477.693 kb on + strand, within BPHYT_RS06495 at 1477.693 kb on + strand, within BPHYT_RS06495 at 1477.804 kb on + strand, within BPHYT_RS06495 at 1477.805 kb on - strand, within BPHYT_RS06495 at 1478.356 kb on - strand, within BPHYT_RS06500 at 1478.369 kb on - strand, within BPHYT_RS06500 at 1478.718 kb on + strand at 1478.719 kb on - strand at 1478.751 kb on + strand at 1478.752 kb on - strand at 1478.831 kb on + strand at 1478.999 kb on + strand, within BPHYT_RS06505 at 1479.011 kb on + strand, within BPHYT_RS06505 at 1479.012 kb on - strand, within BPHYT_RS06505 at 1479.044 kb on - strand, within BPHYT_RS06505 at 1479.230 kb on + strand, within BPHYT_RS06505 at 1479.230 kb on + strand, within BPHYT_RS06505 at 1479.230 kb on + strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.239 kb on + strand, within BPHYT_RS06505 at 1479.362 kb on + strand, within BPHYT_RS06505 at 1479.363 kb on - strand, within BPHYT_RS06505 at 1479.363 kb on - strand, within BPHYT_RS06505 at 1479.608 kb on - strand at 1479.608 kb on - strand at 1479.611 kb on - strand at 1479.683 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 1,477,261 + -0.3 1,477,261 + -0.0 1,477,408 + +0.1 1,477,408 + -0.3 1,477,447 + +0.5 1,477,473 + +0.1 1,477,473 + -0.2 1,477,474 - +0.4 1,477,474 - +0.8 1,477,474 - +0.2 1,477,658 + BPHYT_RS06495 0.34 +1.1 1,477,693 + BPHYT_RS06495 0.38 -0.2 1,477,693 + BPHYT_RS06495 0.38 -0.3 1,477,804 + BPHYT_RS06495 0.53 -0.3 1,477,805 - BPHYT_RS06495 0.53 -0.4 1,478,356 - BPHYT_RS06500 0.29 -0.7 1,478,369 - BPHYT_RS06500 0.31 -0.4 1,478,718 + -1.6 1,478,719 - -0.4 1,478,751 + -0.3 1,478,752 - +1.2 1,478,831 + +0.7 1,478,999 + BPHYT_RS06505 0.31 -1.1 1,479,011 + BPHYT_RS06505 0.33 -0.1 1,479,012 - BPHYT_RS06505 0.33 -0.4 1,479,044 - BPHYT_RS06505 0.37 +0.2 1,479,230 + BPHYT_RS06505 0.63 -0.6 1,479,230 + BPHYT_RS06505 0.63 -0.1 1,479,230 + BPHYT_RS06505 0.63 -0.3 1,479,231 - BPHYT_RS06505 0.63 -0.6 1,479,231 - BPHYT_RS06505 0.63 -0.9 1,479,231 - BPHYT_RS06505 0.63 +0.0 1,479,231 - BPHYT_RS06505 0.63 +1.5 1,479,231 - BPHYT_RS06505 0.63 +0.1 1,479,231 - BPHYT_RS06505 0.63 -0.1 1,479,231 - BPHYT_RS06505 0.63 -0.5 1,479,231 - BPHYT_RS06505 0.63 -0.9 1,479,231 - BPHYT_RS06505 0.63 -0.7 1,479,239 + BPHYT_RS06505 0.64 -0.0 1,479,362 + BPHYT_RS06505 0.81 -0.3 1,479,363 - BPHYT_RS06505 0.81 -1.0 1,479,363 - BPHYT_RS06505 0.81 -0.7 1,479,608 - +0.2 1,479,608 - +0.2 1,479,611 - +1.0 1,479,683 - +0.8
Or see this region's nucleotide sequence