Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04180

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04175 and BPHYT_RS04180 are separated by 432 nucleotidesBPHYT_RS04180 and BPHYT_RS04185 are separated by 73 nucleotides BPHYT_RS04175: BPHYT_RS04175 - hypothetical protein, at 957,402 to 958,118 _RS04175 BPHYT_RS04180: BPHYT_RS04180 - sugar ABC transporter substrate-binding protein, at 958,551 to 959,798 _RS04180 BPHYT_RS04185: BPHYT_RS04185 - diguanylate cyclase, at 959,872 to 961,116 _RS04185 Position (kb) 958 959 960Strain fitness (log2 ratio) -2 -1 0 1 2at 957.601 kb on + strand, within BPHYT_RS04175at 957.669 kb on - strand, within BPHYT_RS04175at 957.669 kb on - strand, within BPHYT_RS04175at 957.697 kb on + strand, within BPHYT_RS04175at 957.697 kb on + strand, within BPHYT_RS04175at 957.872 kb on - strand, within BPHYT_RS04175at 957.917 kb on - strand, within BPHYT_RS04175at 957.958 kb on - strand, within BPHYT_RS04175at 958.096 kb on + strandat 958.096 kb on + strandat 958.202 kb on + strandat 958.367 kb on + strandat 958.368 kb on - strandat 958.389 kb on + strandat 958.447 kb on + strandat 958.492 kb on + strandat 958.552 kb on + strandat 958.638 kb on - strandat 958.730 kb on - strand, within BPHYT_RS04180at 958.798 kb on + strand, within BPHYT_RS04180at 958.799 kb on - strand, within BPHYT_RS04180at 958.916 kb on - strand, within BPHYT_RS04180at 958.916 kb on - strand, within BPHYT_RS04180at 958.934 kb on + strand, within BPHYT_RS04180at 958.956 kb on - strand, within BPHYT_RS04180at 958.956 kb on - strand, within BPHYT_RS04180at 959.407 kb on + strand, within BPHYT_RS04180at 959.408 kb on - strand, within BPHYT_RS04180at 959.518 kb on - strand, within BPHYT_RS04180at 959.518 kb on - strand, within BPHYT_RS04180at 959.646 kb on - strand, within BPHYT_RS04180at 959.709 kb on + strandat 959.873 kb on + strandat 959.874 kb on - strandat 959.899 kb on - strandat 960.018 kb on - strand, within BPHYT_RS04185at 960.018 kb on - strand, within BPHYT_RS04185at 960.018 kb on - strand, within BPHYT_RS04185at 960.018 kb on - strand, within BPHYT_RS04185at 960.054 kb on + strand, within BPHYT_RS04185at 960.056 kb on + strand, within BPHYT_RS04185at 960.056 kb on + strand, within BPHYT_RS04185at 960.056 kb on + strand, within BPHYT_RS04185at 960.056 kb on + strand, within BPHYT_RS04185at 960.056 kb on + strand, within BPHYT_RS04185at 960.056 kb on + strand, within BPHYT_RS04185at 960.057 kb on - strand, within BPHYT_RS04185at 960.057 kb on - strand, within BPHYT_RS04185at 960.276 kb on + strand, within BPHYT_RS04185at 960.277 kb on - strand, within BPHYT_RS04185at 960.278 kb on + strand, within BPHYT_RS04185at 960.278 kb on + strand, within BPHYT_RS04185at 960.278 kb on + strand, within BPHYT_RS04185at 960.278 kb on + strand, within BPHYT_RS04185at 960.278 kb on + strand, within BPHYT_RS04185at 960.279 kb on - strand, within BPHYT_RS04185at 960.380 kb on - strand, within BPHYT_RS04185at 960.438 kb on - strand, within BPHYT_RS04185at 960.470 kb on + strand, within BPHYT_RS04185at 960.703 kb on - strand, within BPHYT_RS04185at 960.703 kb on - strand, within BPHYT_RS04185at 960.703 kb on - strand, within BPHYT_RS04185at 960.703 kb on - strand, within BPHYT_RS04185at 960.710 kb on + strand, within BPHYT_RS04185at 960.710 kb on + strand, within BPHYT_RS04185at 960.710 kb on + strand, within BPHYT_RS04185at 960.711 kb on - strand, within BPHYT_RS04185at 960.756 kb on - strand, within BPHYT_RS04185

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
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957,601 + BPHYT_RS04175 0.28 -0.4
957,669 - BPHYT_RS04175 0.37 +1.0
957,669 - BPHYT_RS04175 0.37 +0.2
957,697 + BPHYT_RS04175 0.41 +0.1
957,697 + BPHYT_RS04175 0.41 +0.2
957,872 - BPHYT_RS04175 0.66 -1.0
957,917 - BPHYT_RS04175 0.72 -0.8
957,958 - BPHYT_RS04175 0.78 +1.3
958,096 + +0.0
958,096 + -0.2
958,202 + -1.2
958,367 + -2.3
958,368 - -0.2
958,389 + +0.8
958,447 + -1.4
958,492 + +0.2
958,552 + -1.1
958,638 - +0.8
958,730 - BPHYT_RS04180 0.14 +2.3
958,798 + BPHYT_RS04180 0.20 -0.6
958,799 - BPHYT_RS04180 0.20 +0.2
958,916 - BPHYT_RS04180 0.29 +2.1
958,916 - BPHYT_RS04180 0.29 +0.0
958,934 + BPHYT_RS04180 0.31 -0.8
958,956 - BPHYT_RS04180 0.32 -0.1
958,956 - BPHYT_RS04180 0.32 -1.6
959,407 + BPHYT_RS04180 0.69 +0.3
959,408 - BPHYT_RS04180 0.69 +0.0
959,518 - BPHYT_RS04180 0.77 +1.3
959,518 - BPHYT_RS04180 0.77 +2.0
959,646 - BPHYT_RS04180 0.88 +0.8
959,709 + +0.3
959,873 + -0.1
959,874 - -0.0
959,899 - -1.4
960,018 - BPHYT_RS04185 0.12 +0.2
960,018 - BPHYT_RS04185 0.12 -0.1
960,018 - BPHYT_RS04185 0.12 +0.2
960,018 - BPHYT_RS04185 0.12 +0.8
960,054 + BPHYT_RS04185 0.15 +0.1
960,056 + BPHYT_RS04185 0.15 +1.7
960,056 + BPHYT_RS04185 0.15 -0.3
960,056 + BPHYT_RS04185 0.15 +0.4
960,056 + BPHYT_RS04185 0.15 +0.2
960,056 + BPHYT_RS04185 0.15 +0.2
960,056 + BPHYT_RS04185 0.15 +0.9
960,057 - BPHYT_RS04185 0.15 -0.1
960,057 - BPHYT_RS04185 0.15 -0.4
960,276 + BPHYT_RS04185 0.32 +0.1
960,277 - BPHYT_RS04185 0.33 +0.6
960,278 + BPHYT_RS04185 0.33 +2.3
960,278 + BPHYT_RS04185 0.33 -0.6
960,278 + BPHYT_RS04185 0.33 +0.0
960,278 + BPHYT_RS04185 0.33 +0.3
960,278 + BPHYT_RS04185 0.33 +0.3
960,279 - BPHYT_RS04185 0.33 -0.0
960,380 - BPHYT_RS04185 0.41 -0.2
960,438 - BPHYT_RS04185 0.45 -0.4
960,470 + BPHYT_RS04185 0.48 +0.1
960,703 - BPHYT_RS04185 0.67 -0.4
960,703 - BPHYT_RS04185 0.67 -0.0
960,703 - BPHYT_RS04185 0.67 +1.4
960,703 - BPHYT_RS04185 0.67 -0.8
960,710 + BPHYT_RS04185 0.67 -0.3
960,710 + BPHYT_RS04185 0.67 +1.6
960,710 + BPHYT_RS04185 0.67 -1.2
960,711 - BPHYT_RS04185 0.67 +0.1
960,756 - BPHYT_RS04185 0.71 +0.6

Or see this region's nucleotide sequence