Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02555 and BPHYT_RS02560 are separated by 101 nucleotides BPHYT_RS02560 and BPHYT_RS02565 are separated by 337 nucleotides BPHYT_RS02565 and BPHYT_RS02570 are separated by 96 nucleotides
BPHYT_RS02555: BPHYT_RS02555 - glutamate--cysteine ligase, at 580,181 to 581,470
_RS02555
BPHYT_RS02560: BPHYT_RS02560 - glutathione synthetase, at 581,572 to 582,528
_RS02560
BPHYT_RS02565: BPHYT_RS02565 - PTS mannose transporter subunit IIA, at 582,866 to 583,393
_RS02565
BPHYT_RS02570: BPHYT_RS02570 - phosphocarrier protein HPr, at 583,490 to 583,759
_RS02570
Position (kb) 581
582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 580.757 kb on + strand, within BPHYT_RS02555 at 580.757 kb on + strand, within BPHYT_RS02555 at 580.758 kb on - strand at 580.758 kb on - strand, within BPHYT_RS02555 at 580.792 kb on - strand, within BPHYT_RS02555 at 580.820 kb on + strand, within BPHYT_RS02555 at 580.883 kb on + strand, within BPHYT_RS02555 at 580.884 kb on - strand, within BPHYT_RS02555 at 580.884 kb on - strand, within BPHYT_RS02555 at 580.983 kb on - strand, within BPHYT_RS02555 at 581.012 kb on + strand, within BPHYT_RS02555 at 581.012 kb on + strand, within BPHYT_RS02555 at 581.012 kb on + strand, within BPHYT_RS02555 at 581.013 kb on - strand, within BPHYT_RS02555 at 581.013 kb on - strand, within BPHYT_RS02555 at 581.043 kb on - strand, within BPHYT_RS02555 at 581.171 kb on + strand, within BPHYT_RS02555 at 581.171 kb on + strand, within BPHYT_RS02555 at 581.172 kb on - strand, within BPHYT_RS02555 at 581.216 kb on + strand, within BPHYT_RS02555 at 581.216 kb on + strand, within BPHYT_RS02555 at 581.216 kb on + strand, within BPHYT_RS02555 at 581.231 kb on + strand, within BPHYT_RS02555 at 581.384 kb on + strand at 581.385 kb on - strand at 581.385 kb on - strand at 581.385 kb on - strand at 581.386 kb on + strand at 581.386 kb on + strand at 581.386 kb on + strand at 581.387 kb on - strand at 581.387 kb on - strand at 581.387 kb on - strand at 581.387 kb on - strand at 581.390 kb on + strand at 581.390 kb on + strand at 581.390 kb on + strand at 581.390 kb on + strand at 581.390 kb on + strand at 581.391 kb on - strand at 581.391 kb on - strand at 581.468 kb on + strand at 581.469 kb on - strand at 581.525 kb on + strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.528 kb on - strand at 581.528 kb on - strand at 581.532 kb on - strand at 581.617 kb on + strand at 581.632 kb on + strand at 581.674 kb on + strand, within BPHYT_RS02560 at 581.674 kb on + strand, within BPHYT_RS02560 at 581.675 kb on - strand, within BPHYT_RS02560 at 581.675 kb on - strand, within BPHYT_RS02560 at 581.675 kb on - strand, within BPHYT_RS02560 at 581.739 kb on + strand, within BPHYT_RS02560 at 581.739 kb on + strand, within BPHYT_RS02560 at 581.740 kb on - strand, within BPHYT_RS02560 at 581.740 kb on - strand, within BPHYT_RS02560 at 581.866 kb on + strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560 at 582.584 kb on + strand at 582.584 kb on + strand at 582.585 kb on - strand at 582.633 kb on + strand at 582.634 kb on - strand at 582.634 kb on - strand at 582.634 kb on - strand at 582.634 kb on - strand at 582.701 kb on + strand at 583.389 kb on + strand at 583.391 kb on + strand at 583.391 kb on + strand at 583.391 kb on + strand at 583.392 kb on - strand at 583.392 kb on - strand at 583.449 kb on + strand at 583.468 kb on + strand at 583.511 kb on - strand at 583.511 kb on - strand at 583.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 580,757 + BPHYT_RS02555 0.45 -1.8 580,757 + BPHYT_RS02555 0.45 -1.8 580,758 - -1.0 580,758 - BPHYT_RS02555 0.45 -1.5 580,792 - BPHYT_RS02555 0.47 -0.7 580,820 + BPHYT_RS02555 0.50 -1.2 580,883 + BPHYT_RS02555 0.54 -1.4 580,884 - BPHYT_RS02555 0.54 +0.8 580,884 - BPHYT_RS02555 0.54 +0.3 580,983 - BPHYT_RS02555 0.62 -2.3 581,012 + BPHYT_RS02555 0.64 -0.6 581,012 + BPHYT_RS02555 0.64 -1.2 581,012 + BPHYT_RS02555 0.64 -0.4 581,013 - BPHYT_RS02555 0.64 -2.0 581,013 - BPHYT_RS02555 0.64 -2.2 581,043 - BPHYT_RS02555 0.67 -1.8 581,171 + BPHYT_RS02555 0.77 +0.0 581,171 + BPHYT_RS02555 0.77 -0.9 581,172 - BPHYT_RS02555 0.77 +0.4 581,216 + BPHYT_RS02555 0.80 +0.3 581,216 + BPHYT_RS02555 0.80 +0.5 581,216 + BPHYT_RS02555 0.80 -0.9 581,231 + BPHYT_RS02555 0.81 -0.2 581,384 + -1.3 581,385 - -1.0 581,385 - -0.9 581,385 - -1.8 581,386 + -1.0 581,386 + -0.8 581,386 + -0.9 581,387 - -1.7 581,387 - -1.8 581,387 - -0.9 581,387 - -1.5 581,390 + -1.1 581,390 + -1.0 581,390 + -0.1 581,390 + -0.3 581,390 + -0.7 581,391 - -2.2 581,391 - -0.8 581,468 + -1.0 581,469 - +0.0 581,525 + -0.5 581,527 + -1.0 581,527 + +1.6 581,527 + -0.2 581,527 + +0.3 581,527 + -1.0 581,528 - -0.3 581,528 - +0.5 581,532 - +0.5 581,617 + -1.4 581,632 + -1.7 581,674 + BPHYT_RS02560 0.11 -0.7 581,674 + BPHYT_RS02560 0.11 -0.3 581,675 - BPHYT_RS02560 0.11 -1.8 581,675 - BPHYT_RS02560 0.11 -0.9 581,675 - BPHYT_RS02560 0.11 -2.7 581,739 + BPHYT_RS02560 0.17 +0.1 581,739 + BPHYT_RS02560 0.17 -2.7 581,740 - BPHYT_RS02560 0.18 -2.1 581,740 - BPHYT_RS02560 0.18 +0.3 581,866 + BPHYT_RS02560 0.31 -1.0 581,867 - BPHYT_RS02560 0.31 -0.2 581,867 - BPHYT_RS02560 0.31 -0.3 581,867 - BPHYT_RS02560 0.31 +0.8 581,867 - BPHYT_RS02560 0.31 -1.7 581,867 - BPHYT_RS02560 0.31 -1.5 582,584 + -0.8 582,584 + -0.5 582,585 - -0.2 582,633 + -1.8 582,634 - -0.0 582,634 - +0.3 582,634 - +0.6 582,634 - +1.8 582,701 + -0.5 583,389 + +1.8 583,391 + +0.0 583,391 + +1.8 583,391 + +0.8 583,392 - +0.3 583,392 - -0.7 583,449 + -1.0 583,468 + -1.2 583,511 - -3.2 583,511 - -3.4 583,511 - -3.6
Or see this region's nucleotide sequence