Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02550 and BPHYT_RS02555 are separated by 236 nucleotides BPHYT_RS02555 and BPHYT_RS02560 are separated by 101 nucleotides
BPHYT_RS02550: BPHYT_RS02550 - ammonia channel protein, at 578,436 to 579,944
_RS02550
BPHYT_RS02555: BPHYT_RS02555 - glutamate--cysteine ligase, at 580,181 to 581,470
_RS02555
BPHYT_RS02560: BPHYT_RS02560 - glutathione synthetase, at 581,572 to 582,528
_RS02560
Position (kb) 580
581
582 Strain fitness (log2 ratio) -2
-1
0
1 at 579.353 kb on + strand, within BPHYT_RS02550 at 579.353 kb on + strand, within BPHYT_RS02550 at 579.354 kb on - strand, within BPHYT_RS02550 at 579.822 kb on + strand at 579.840 kb on + strand at 579.841 kb on - strand at 579.841 kb on - strand at 579.942 kb on + strand at 579.943 kb on - strand at 579.943 kb on - strand at 579.985 kb on - strand at 580.041 kb on + strand at 580.041 kb on + strand at 580.048 kb on + strand at 580.048 kb on + strand at 580.048 kb on + strand at 580.049 kb on - strand at 580.069 kb on + strand at 580.070 kb on - strand at 580.070 kb on - strand at 580.081 kb on - strand at 580.149 kb on - strand at 580.194 kb on + strand at 580.195 kb on - strand at 580.195 kb on - strand at 580.308 kb on - strand at 580.505 kb on + strand, within BPHYT_RS02555 at 580.757 kb on + strand, within BPHYT_RS02555 at 580.757 kb on + strand, within BPHYT_RS02555 at 580.758 kb on - strand at 580.758 kb on - strand, within BPHYT_RS02555 at 580.792 kb on - strand, within BPHYT_RS02555 at 580.820 kb on + strand, within BPHYT_RS02555 at 580.883 kb on + strand, within BPHYT_RS02555 at 580.884 kb on - strand, within BPHYT_RS02555 at 580.884 kb on - strand, within BPHYT_RS02555 at 580.983 kb on - strand, within BPHYT_RS02555 at 581.012 kb on + strand, within BPHYT_RS02555 at 581.012 kb on + strand, within BPHYT_RS02555 at 581.012 kb on + strand, within BPHYT_RS02555 at 581.013 kb on - strand, within BPHYT_RS02555 at 581.013 kb on - strand, within BPHYT_RS02555 at 581.043 kb on - strand, within BPHYT_RS02555 at 581.171 kb on + strand, within BPHYT_RS02555 at 581.171 kb on + strand, within BPHYT_RS02555 at 581.172 kb on - strand, within BPHYT_RS02555 at 581.216 kb on + strand, within BPHYT_RS02555 at 581.216 kb on + strand, within BPHYT_RS02555 at 581.216 kb on + strand, within BPHYT_RS02555 at 581.231 kb on + strand, within BPHYT_RS02555 at 581.384 kb on + strand at 581.385 kb on - strand at 581.385 kb on - strand at 581.385 kb on - strand at 581.386 kb on + strand at 581.386 kb on + strand at 581.386 kb on + strand at 581.387 kb on - strand at 581.387 kb on - strand at 581.387 kb on - strand at 581.387 kb on - strand at 581.390 kb on + strand at 581.390 kb on + strand at 581.390 kb on + strand at 581.390 kb on + strand at 581.390 kb on + strand at 581.391 kb on - strand at 581.391 kb on - strand at 581.468 kb on + strand at 581.469 kb on - strand at 581.525 kb on + strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.528 kb on - strand at 581.528 kb on - strand at 581.532 kb on - strand at 581.617 kb on + strand at 581.632 kb on + strand at 581.674 kb on + strand, within BPHYT_RS02560 at 581.674 kb on + strand, within BPHYT_RS02560 at 581.675 kb on - strand, within BPHYT_RS02560 at 581.675 kb on - strand, within BPHYT_RS02560 at 581.675 kb on - strand, within BPHYT_RS02560 at 581.739 kb on + strand, within BPHYT_RS02560 at 581.739 kb on + strand, within BPHYT_RS02560 at 581.740 kb on - strand, within BPHYT_RS02560 at 581.740 kb on - strand, within BPHYT_RS02560 at 581.866 kb on + strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 579,353 + BPHYT_RS02550 0.61 +0.1 579,353 + BPHYT_RS02550 0.61 -0.7 579,354 - BPHYT_RS02550 0.61 -0.0 579,822 + -0.6 579,840 + +0.5 579,841 - +0.3 579,841 - -1.7 579,942 + +0.6 579,943 - -0.1 579,943 - -0.4 579,985 - +0.2 580,041 + +0.4 580,041 + -0.2 580,048 + +0.3 580,048 + +0.2 580,048 + +1.0 580,049 - -0.4 580,069 + +0.5 580,070 - -0.7 580,070 - -0.5 580,081 - -0.6 580,149 - -0.1 580,194 + +0.2 580,195 - -1.3 580,195 - +0.0 580,308 - -0.3 580,505 + BPHYT_RS02555 0.25 +0.3 580,757 + BPHYT_RS02555 0.45 -1.8 580,757 + BPHYT_RS02555 0.45 -1.8 580,758 - -1.0 580,758 - BPHYT_RS02555 0.45 -1.5 580,792 - BPHYT_RS02555 0.47 -0.7 580,820 + BPHYT_RS02555 0.50 -1.2 580,883 + BPHYT_RS02555 0.54 -1.4 580,884 - BPHYT_RS02555 0.54 +0.8 580,884 - BPHYT_RS02555 0.54 +0.3 580,983 - BPHYT_RS02555 0.62 -2.3 581,012 + BPHYT_RS02555 0.64 -0.6 581,012 + BPHYT_RS02555 0.64 -1.2 581,012 + BPHYT_RS02555 0.64 -0.4 581,013 - BPHYT_RS02555 0.64 -2.0 581,013 - BPHYT_RS02555 0.64 -2.2 581,043 - BPHYT_RS02555 0.67 -1.8 581,171 + BPHYT_RS02555 0.77 +0.0 581,171 + BPHYT_RS02555 0.77 -0.9 581,172 - BPHYT_RS02555 0.77 +0.4 581,216 + BPHYT_RS02555 0.80 +0.3 581,216 + BPHYT_RS02555 0.80 +0.5 581,216 + BPHYT_RS02555 0.80 -0.9 581,231 + BPHYT_RS02555 0.81 -0.2 581,384 + -1.3 581,385 - -1.0 581,385 - -0.9 581,385 - -1.8 581,386 + -1.0 581,386 + -0.8 581,386 + -0.9 581,387 - -1.7 581,387 - -1.8 581,387 - -0.9 581,387 - -1.5 581,390 + -1.1 581,390 + -1.0 581,390 + -0.1 581,390 + -0.3 581,390 + -0.7 581,391 - -2.2 581,391 - -0.8 581,468 + -1.0 581,469 - +0.0 581,525 + -0.5 581,527 + -1.0 581,527 + +1.6 581,527 + -0.2 581,527 + +0.3 581,527 + -1.0 581,528 - -0.3 581,528 - +0.5 581,532 - +0.5 581,617 + -1.4 581,632 + -1.7 581,674 + BPHYT_RS02560 0.11 -0.7 581,674 + BPHYT_RS02560 0.11 -0.3 581,675 - BPHYT_RS02560 0.11 -1.8 581,675 - BPHYT_RS02560 0.11 -0.9 581,675 - BPHYT_RS02560 0.11 -2.7 581,739 + BPHYT_RS02560 0.17 +0.1 581,739 + BPHYT_RS02560 0.17 -2.7 581,740 - BPHYT_RS02560 0.18 -2.1 581,740 - BPHYT_RS02560 0.18 +0.3 581,866 + BPHYT_RS02560 0.31 -1.0 581,867 - BPHYT_RS02560 0.31 -0.2 581,867 - BPHYT_RS02560 0.31 -0.3 581,867 - BPHYT_RS02560 0.31 +0.8 581,867 - BPHYT_RS02560 0.31 -1.7 581,867 - BPHYT_RS02560 0.31 -1.5
Or see this region's nucleotide sequence