Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00720 and BPHYT_RS00725 overlap by 4 nucleotides BPHYT_RS00725 and BPHYT_RS00730 are separated by 81 nucleotides
BPHYT_RS00720: BPHYT_RS00720 - amidase, at 167,570 to 168,997
_RS00720
BPHYT_RS00725: BPHYT_RS00725 - hypothetical protein, at 168,994 to 169,539
_RS00725
BPHYT_RS00730: BPHYT_RS00730 - porin, at 169,621 to 170,655
_RS00730
Position (kb) 168
169
170 Strain fitness (log2 ratio) -1
0
1
2 at 168.492 kb on - strand, within BPHYT_RS00720 at 168.495 kb on - strand, within BPHYT_RS00720 at 168.695 kb on - strand, within BPHYT_RS00720 at 168.851 kb on - strand, within BPHYT_RS00720 at 168.921 kb on - strand at 168.921 kb on - strand at 168.921 kb on - strand at 168.921 kb on - strand at 168.921 kb on - strand at 168.921 kb on - strand at 169.287 kb on - strand, within BPHYT_RS00725 at 169.482 kb on - strand, within BPHYT_RS00725 at 169.616 kb on + strand at 169.617 kb on - strand at 169.624 kb on + strand at 169.624 kb on + strand at 169.718 kb on + strand at 169.912 kb on + strand, within BPHYT_RS00730 at 170.140 kb on + strand, within BPHYT_RS00730 at 170.182 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.225 kb on - strand, within BPHYT_RS00730 at 170.242 kb on + strand, within BPHYT_RS00730 at 170.383 kb on + strand, within BPHYT_RS00730 at 170.465 kb on + strand, within BPHYT_RS00730 at 170.465 kb on + strand, within BPHYT_RS00730 at 170.465 kb on + strand, within BPHYT_RS00730 at 170.465 kb on + strand, within BPHYT_RS00730 at 170.466 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 168,492 - BPHYT_RS00720 0.65 -0.4 168,495 - BPHYT_RS00720 0.65 +0.2 168,695 - BPHYT_RS00720 0.79 +0.3 168,851 - BPHYT_RS00720 0.90 -0.1 168,921 - -0.3 168,921 - -0.5 168,921 - +0.1 168,921 - -0.1 168,921 - -0.3 168,921 - -0.4 169,287 - BPHYT_RS00725 0.54 +1.4 169,482 - BPHYT_RS00725 0.89 +1.7 169,616 + -0.5 169,617 - -0.1 169,624 + +0.2 169,624 + +2.5 169,718 + +0.1 169,912 + BPHYT_RS00730 0.28 +0.1 170,140 + BPHYT_RS00730 0.50 -0.8 170,182 + BPHYT_RS00730 0.54 -0.3 170,224 + BPHYT_RS00730 0.58 +0.7 170,224 + BPHYT_RS00730 0.58 -0.4 170,224 + BPHYT_RS00730 0.58 +0.0 170,224 + BPHYT_RS00730 0.58 +0.2 170,224 + BPHYT_RS00730 0.58 -1.4 170,224 + BPHYT_RS00730 0.58 -0.0 170,225 - BPHYT_RS00730 0.58 +0.1 170,242 + BPHYT_RS00730 0.60 +0.4 170,383 + BPHYT_RS00730 0.74 +0.4 170,465 + BPHYT_RS00730 0.82 -0.0 170,465 + BPHYT_RS00730 0.82 +0.9 170,465 + BPHYT_RS00730 0.82 -1.2 170,465 + BPHYT_RS00730 0.82 +0.1 170,466 - +0.8
Or see this region's nucleotide sequence