Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00670 and BPHYT_RS00675 are separated by 239 nucleotides BPHYT_RS00675 and BPHYT_RS00680 are separated by 54 nucleotides
BPHYT_RS00670: BPHYT_RS00670 - acyl-CoA dehydrogenase, at 157,784 to 159,094
_RS00670
BPHYT_RS00675: BPHYT_RS00675 - GntR family transcriptional regulator, at 159,334 to 160,170
_RS00675
BPHYT_RS00680: BPHYT_RS00680 - amidase, at 160,225 to 161,649
_RS00680
Position (kb) 159
160
161 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 158.415 kb on + strand, within BPHYT_RS00670 at 158.488 kb on + strand, within BPHYT_RS00670 at 158.488 kb on + strand, within BPHYT_RS00670 at 158.489 kb on - strand, within BPHYT_RS00670 at 158.520 kb on + strand, within BPHYT_RS00670 at 158.642 kb on - strand at 158.642 kb on - strand, within BPHYT_RS00670 at 159.084 kb on + strand at 159.085 kb on - strand at 159.146 kb on + strand at 159.172 kb on + strand at 159.173 kb on - strand at 159.186 kb on - strand at 159.221 kb on + strand at 159.287 kb on + strand at 159.320 kb on + strand at 159.320 kb on + strand at 159.321 kb on - strand at 159.321 kb on - strand at 159.333 kb on + strand at 159.333 kb on + strand at 159.333 kb on + strand at 159.334 kb on - strand at 159.606 kb on + strand, within BPHYT_RS00675 at 159.607 kb on - strand, within BPHYT_RS00675 at 159.649 kb on + strand, within BPHYT_RS00675 at 159.650 kb on - strand, within BPHYT_RS00675 at 159.685 kb on + strand, within BPHYT_RS00675 at 159.685 kb on + strand, within BPHYT_RS00675 at 159.685 kb on + strand, within BPHYT_RS00675 at 159.686 kb on - strand, within BPHYT_RS00675 at 159.686 kb on - strand, within BPHYT_RS00675 at 159.714 kb on - strand, within BPHYT_RS00675 at 159.783 kb on - strand, within BPHYT_RS00675 at 159.921 kb on + strand, within BPHYT_RS00675 at 159.922 kb on - strand, within BPHYT_RS00675 at 159.961 kb on + strand, within BPHYT_RS00675 at 159.962 kb on - strand, within BPHYT_RS00675 at 159.962 kb on - strand, within BPHYT_RS00675 at 160.216 kb on + strand at 160.220 kb on + strand at 160.220 kb on + strand at 160.221 kb on - strand at 160.221 kb on - strand at 160.221 kb on - strand at 160.242 kb on + strand at 160.401 kb on - strand, within BPHYT_RS00680 at 160.405 kb on - strand, within BPHYT_RS00680 at 160.405 kb on - strand, within BPHYT_RS00680 at 160.405 kb on - strand, within BPHYT_RS00680 at 160.505 kb on + strand, within BPHYT_RS00680 at 160.506 kb on - strand, within BPHYT_RS00680 at 160.506 kb on - strand, within BPHYT_RS00680 at 160.506 kb on - strand, within BPHYT_RS00680 at 160.506 kb on - strand, within BPHYT_RS00680 at 160.628 kb on + strand, within BPHYT_RS00680 at 160.628 kb on + strand, within BPHYT_RS00680 at 160.629 kb on - strand, within BPHYT_RS00680 at 160.629 kb on - strand, within BPHYT_RS00680 at 160.681 kb on - strand, within BPHYT_RS00680 at 160.856 kb on + strand, within BPHYT_RS00680 at 160.856 kb on + strand, within BPHYT_RS00680 at 160.856 kb on + strand, within BPHYT_RS00680 at 160.857 kb on - strand, within BPHYT_RS00680 at 160.857 kb on - strand, within BPHYT_RS00680 at 160.857 kb on - strand, within BPHYT_RS00680 at 160.862 kb on - strand, within BPHYT_RS00680 at 160.907 kb on + strand, within BPHYT_RS00680 at 160.934 kb on + strand, within BPHYT_RS00680 at 161.013 kb on + strand, within BPHYT_RS00680 at 161.085 kb on + strand, within BPHYT_RS00680 at 161.151 kb on + strand, within BPHYT_RS00680 at 161.151 kb on + strand, within BPHYT_RS00680
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 158,415 + BPHYT_RS00670 0.48 +0.6 158,488 + BPHYT_RS00670 0.54 -0.7 158,488 + BPHYT_RS00670 0.54 -1.1 158,489 - BPHYT_RS00670 0.54 -0.2 158,520 + BPHYT_RS00670 0.56 +0.3 158,642 - -0.5 158,642 - BPHYT_RS00670 0.65 +5.6 159,084 + -0.7 159,085 - +0.3 159,146 + -0.1 159,172 + -0.2 159,173 - -0.7 159,186 - -0.1 159,221 + +1.1 159,287 + -0.6 159,320 + -1.7 159,320 + -0.3 159,321 - -0.1 159,321 - -0.3 159,333 + +0.3 159,333 + +1.0 159,333 + -0.2 159,334 - +2.8 159,606 + BPHYT_RS00675 0.32 +1.8 159,607 - BPHYT_RS00675 0.33 -0.4 159,649 + BPHYT_RS00675 0.38 -1.9 159,650 - BPHYT_RS00675 0.38 -0.2 159,685 + BPHYT_RS00675 0.42 +0.7 159,685 + BPHYT_RS00675 0.42 -0.8 159,685 + BPHYT_RS00675 0.42 -0.7 159,686 - BPHYT_RS00675 0.42 -0.1 159,686 - BPHYT_RS00675 0.42 -1.3 159,714 - BPHYT_RS00675 0.45 -2.1 159,783 - BPHYT_RS00675 0.54 -1.9 159,921 + BPHYT_RS00675 0.70 +0.3 159,922 - BPHYT_RS00675 0.70 -2.6 159,961 + BPHYT_RS00675 0.75 -0.4 159,962 - BPHYT_RS00675 0.75 +0.1 159,962 - BPHYT_RS00675 0.75 -0.9 160,216 + -1.2 160,220 + +1.7 160,220 + +0.6 160,221 - +0.8 160,221 - -0.5 160,221 - +0.2 160,242 + -0.2 160,401 - BPHYT_RS00680 0.12 -0.5 160,405 - BPHYT_RS00680 0.13 -0.5 160,405 - BPHYT_RS00680 0.13 +1.0 160,405 - BPHYT_RS00680 0.13 -0.2 160,505 + BPHYT_RS00680 0.20 +2.1 160,506 - BPHYT_RS00680 0.20 +0.2 160,506 - BPHYT_RS00680 0.20 -0.0 160,506 - BPHYT_RS00680 0.20 -0.2 160,506 - BPHYT_RS00680 0.20 +0.1 160,628 + BPHYT_RS00680 0.28 +0.1 160,628 + BPHYT_RS00680 0.28 +1.6 160,629 - BPHYT_RS00680 0.28 +1.0 160,629 - BPHYT_RS00680 0.28 +0.0 160,681 - BPHYT_RS00680 0.32 +0.6 160,856 + BPHYT_RS00680 0.44 -0.5 160,856 + BPHYT_RS00680 0.44 -1.1 160,856 + BPHYT_RS00680 0.44 +1.4 160,857 - BPHYT_RS00680 0.44 +0.5 160,857 - BPHYT_RS00680 0.44 -0.5 160,857 - BPHYT_RS00680 0.44 +0.6 160,862 - BPHYT_RS00680 0.45 +1.0 160,907 + BPHYT_RS00680 0.48 +0.0 160,934 + BPHYT_RS00680 0.50 -1.7 161,013 + BPHYT_RS00680 0.55 -0.2 161,085 + BPHYT_RS00680 0.60 -1.2 161,151 + BPHYT_RS00680 0.65 -0.2 161,151 + BPHYT_RS00680 0.65 +0.4
Or see this region's nucleotide sequence