Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00560 and BPHYT_RS00565 are separated by 4 nucleotides BPHYT_RS00565 and BPHYT_RS00570 are separated by 236 nucleotides
BPHYT_RS00560: BPHYT_RS00560 - membrane protein, at 136,063 to 137,451
_RS00560
BPHYT_RS00565: BPHYT_RS00565 - ubiquinol oxidase subunit II, cyanide insensitive, at 137,456 to 138,463
_RS00565
BPHYT_RS00570: BPHYT_RS00570 - hypothetical protein, at 138,700 to 139,611
_RS00570
Position (kb) 137
138
139 Strain fitness (log2 ratio) -1
0
1
2 at 136.544 kb on + strand, within BPHYT_RS00560 at 136.544 kb on + strand, within BPHYT_RS00560 at 136.545 kb on - strand, within BPHYT_RS00560 at 136.620 kb on + strand, within BPHYT_RS00560 at 136.805 kb on - strand, within BPHYT_RS00560 at 137.093 kb on + strand, within BPHYT_RS00560 at 137.094 kb on - strand, within BPHYT_RS00560 at 137.094 kb on - strand, within BPHYT_RS00560 at 137.094 kb on - strand, within BPHYT_RS00560 at 137.227 kb on + strand, within BPHYT_RS00560 at 137.338 kb on + strand at 137.341 kb on + strand at 137.342 kb on - strand at 137.450 kb on - strand at 137.505 kb on + strand at 137.506 kb on - strand at 137.514 kb on - strand at 137.514 kb on - strand at 137.553 kb on + strand at 137.681 kb on + strand, within BPHYT_RS00565 at 137.705 kb on + strand, within BPHYT_RS00565 at 137.705 kb on + strand, within BPHYT_RS00565 at 137.706 kb on - strand, within BPHYT_RS00565 at 137.706 kb on - strand, within BPHYT_RS00565 at 137.706 kb on - strand, within BPHYT_RS00565 at 138.034 kb on - strand, within BPHYT_RS00565 at 138.194 kb on + strand, within BPHYT_RS00565 at 138.194 kb on + strand, within BPHYT_RS00565 at 138.195 kb on - strand, within BPHYT_RS00565 at 138.391 kb on - strand at 138.398 kb on + strand at 138.676 kb on + strand at 139.006 kb on + strand, within BPHYT_RS00570 at 139.006 kb on + strand, within BPHYT_RS00570 at 139.064 kb on - strand, within BPHYT_RS00570 at 139.064 kb on - strand, within BPHYT_RS00570 at 139.341 kb on - strand, within BPHYT_RS00570 at 139.354 kb on + strand, within BPHYT_RS00570 at 139.360 kb on + strand, within BPHYT_RS00570 at 139.368 kb on - strand, within BPHYT_RS00570 at 139.435 kb on + strand, within BPHYT_RS00570 at 139.438 kb on - strand, within BPHYT_RS00570
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 136,544 + BPHYT_RS00560 0.35 -0.9 136,544 + BPHYT_RS00560 0.35 +0.3 136,545 - BPHYT_RS00560 0.35 +0.6 136,620 + BPHYT_RS00560 0.40 +1.0 136,805 - BPHYT_RS00560 0.53 -0.7 137,093 + BPHYT_RS00560 0.74 -0.5 137,094 - BPHYT_RS00560 0.74 +0.2 137,094 - BPHYT_RS00560 0.74 -0.5 137,094 - BPHYT_RS00560 0.74 +1.5 137,227 + BPHYT_RS00560 0.84 -0.7 137,338 + -1.0 137,341 + +0.7 137,342 - -0.8 137,450 - -0.1 137,505 + -0.5 137,506 - +0.4 137,514 - -0.3 137,514 - -0.3 137,553 + -0.3 137,681 + BPHYT_RS00565 0.22 +2.7 137,705 + BPHYT_RS00565 0.25 -0.5 137,705 + BPHYT_RS00565 0.25 -0.8 137,706 - BPHYT_RS00565 0.25 +0.8 137,706 - BPHYT_RS00565 0.25 -0.1 137,706 - BPHYT_RS00565 0.25 +1.1 138,034 - BPHYT_RS00565 0.57 +0.6 138,194 + BPHYT_RS00565 0.73 -0.3 138,194 + BPHYT_RS00565 0.73 +1.2 138,195 - BPHYT_RS00565 0.73 +0.6 138,391 - +0.3 138,398 + -0.3 138,676 + +0.3 139,006 + BPHYT_RS00570 0.34 +0.2 139,006 + BPHYT_RS00570 0.34 -0.5 139,064 - BPHYT_RS00570 0.40 +1.2 139,064 - BPHYT_RS00570 0.40 +0.8 139,341 - BPHYT_RS00570 0.70 -0.2 139,354 + BPHYT_RS00570 0.72 -0.1 139,360 + BPHYT_RS00570 0.72 -0.3 139,368 - BPHYT_RS00570 0.73 -0.6 139,435 + BPHYT_RS00570 0.81 +0.1 139,438 - BPHYT_RS00570 0.81 -0.5
Or see this region's nucleotide sequence