Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35655 and BPHYT_RS35660 are separated by 62 nucleotides BPHYT_RS35660 and BPHYT_RS35665 overlap by 4 nucleotides BPHYT_RS35665 and BPHYT_RS35670 are separated by 145 nucleotides
BPHYT_RS35655: BPHYT_RS35655 - hypothetical protein, at 3,592,015 to 3,592,308
_RS35655
BPHYT_RS35660: BPHYT_RS35660 - membrane protein, at 3,592,371 to 3,593,222
_RS35660
BPHYT_RS35665: BPHYT_RS35665 - ABC transporter permease, at 3,593,219 to 3,594,109
_RS35665
BPHYT_RS35670: BPHYT_RS35670 - bicyclomycin resistance protein, at 3,594,255 to 3,595,487
_RS35670
Position (kb) 3593
3594
3595 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3592.222 kb on + strand, within BPHYT_RS35655 at 3592.238 kb on - strand, within BPHYT_RS35655 at 3592.372 kb on + strand at 3592.373 kb on - strand at 3592.408 kb on + strand at 3592.428 kb on + strand at 3592.493 kb on - strand, within BPHYT_RS35660 at 3592.559 kb on + strand, within BPHYT_RS35660 at 3592.817 kb on - strand, within BPHYT_RS35660 at 3593.001 kb on - strand, within BPHYT_RS35660 at 3593.001 kb on - strand, within BPHYT_RS35660 at 3593.154 kb on + strand at 3593.350 kb on - strand, within BPHYT_RS35665 at 3593.355 kb on + strand, within BPHYT_RS35665 at 3593.356 kb on - strand, within BPHYT_RS35665 at 3593.434 kb on - strand, within BPHYT_RS35665 at 3593.811 kb on + strand, within BPHYT_RS35665 at 3594.123 kb on + strand at 3594.140 kb on + strand at 3594.178 kb on + strand at 3594.605 kb on - strand, within BPHYT_RS35670 at 3594.899 kb on - strand, within BPHYT_RS35670 at 3595.042 kb on + strand, within BPHYT_RS35670 at 3595.043 kb on - strand, within BPHYT_RS35670 at 3595.045 kb on + strand, within BPHYT_RS35670
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 3,592,222 + BPHYT_RS35655 0.70 +0.2 3,592,238 - BPHYT_RS35655 0.76 +0.6 3,592,372 + -0.1 3,592,373 - -2.3 3,592,408 + -0.4 3,592,428 + -0.3 3,592,493 - BPHYT_RS35660 0.14 -0.8 3,592,559 + BPHYT_RS35660 0.22 +0.6 3,592,817 - BPHYT_RS35660 0.52 +0.3 3,593,001 - BPHYT_RS35660 0.74 +0.8 3,593,001 - BPHYT_RS35660 0.74 +0.5 3,593,154 + -0.5 3,593,350 - BPHYT_RS35665 0.15 +1.5 3,593,355 + BPHYT_RS35665 0.15 +0.4 3,593,356 - BPHYT_RS35665 0.15 +1.2 3,593,434 - BPHYT_RS35665 0.24 +2.5 3,593,811 + BPHYT_RS35665 0.66 +0.6 3,594,123 + -0.6 3,594,140 + -0.2 3,594,178 + -1.0 3,594,605 - BPHYT_RS35670 0.28 -0.7 3,594,899 - BPHYT_RS35670 0.52 +0.4 3,595,042 + BPHYT_RS35670 0.64 +0.2 3,595,043 - BPHYT_RS35670 0.64 +0.8 3,595,045 + BPHYT_RS35670 0.64 -0.1
Or see this region's nucleotide sequence