Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28440

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28435 and BPHYT_RS28440 are separated by 693 nucleotidesBPHYT_RS28440 and BPHYT_RS28445 are separated by 250 nucleotides BPHYT_RS28435: BPHYT_RS28435 - MBL fold metallo-hydrolase, at 1,932,720 to 1,933,652 _RS28435 BPHYT_RS28440: BPHYT_RS28440 - heat shock Hsp20, at 1,934,346 to 1,934,786 _RS28440 BPHYT_RS28445: BPHYT_RS28445 - hypothetical protein, at 1,935,037 to 1,935,417 _RS28445 Position (kb) 1934 1935Strain fitness (log2 ratio) -1 0 1at 1933.672 kb on + strandat 1933.788 kb on + strandat 1934.299 kb on - strandat 1934.347 kb on + strandat 1934.506 kb on - strand, within BPHYT_RS28440at 1934.506 kb on - strand, within BPHYT_RS28440at 1934.694 kb on - strand, within BPHYT_RS28440at 1935.032 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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1,933,672 + -0.2
1,933,788 + -1.0
1,934,299 - -0.2
1,934,347 + -0.6
1,934,506 - BPHYT_RS28440 0.36 +1.0
1,934,506 - BPHYT_RS28440 0.36 +0.5
1,934,694 - BPHYT_RS28440 0.79 +1.5
1,935,032 + +1.0

Or see this region's nucleotide sequence