Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27545

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27535 and BPHYT_RS27540 are separated by 169 nucleotidesBPHYT_RS27540 and BPHYT_RS27545 are separated by 44 nucleotides BPHYT_RS27535: BPHYT_RS27535 - hypothetical protein, at 1,751,808 to 1,752,026 _RS27535 BPHYT_RS27540: BPHYT_RS27540 - phasin, at 1,752,196 to 1,752,678 _RS27540 BPHYT_RS27545: BPHYT_RS27545 - histidine kinase, at 1,752,723 to 1,753,415 _RS27545 Position (kb) 1752 1753 1754Strain fitness (log2 ratio) -1 0 1at 1751.750 kb on + strandat 1752.872 kb on + strand, within BPHYT_RS27545at 1753.339 kb on - strand, within BPHYT_RS27545at 1753.419 kb on - strandat 1753.642 kb on + strandat 1753.652 kb on + strandat 1753.753 kb on - strandat 1753.753 kb on - strandat 1753.954 kb on + strandat 1754.400 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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1,751,750 + -0.4
1,752,872 + BPHYT_RS27545 0.22 +1.1
1,753,339 - BPHYT_RS27545 0.89 +0.3
1,753,419 - -0.3
1,753,642 + -0.9
1,753,652 + -0.4
1,753,753 - -0.3
1,753,753 - -0.1
1,753,954 + -0.1
1,754,400 - +0.1

Or see this region's nucleotide sequence