Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24590 and BPHYT_RS24595 are separated by 483 nucleotides BPHYT_RS24595 and BPHYT_RS24600 are separated by 41 nucleotides BPHYT_RS24600 and BPHYT_RS24605 overlap by 4 nucleotides
BPHYT_RS24590: BPHYT_RS24590 - DeoR faimly transcriptional regulator, at 1,085,528 to 1,086,289
_RS24590
BPHYT_RS24595: BPHYT_RS24595 - aldehyde oxidase, at 1,086,773 to 1,089,601
_RS24595
BPHYT_RS24600: BPHYT_RS24600 - (2Fe-2S)-binding protein, at 1,089,643 to 1,090,380
_RS24600
BPHYT_RS24605: BPHYT_RS24605 - cytochrome CBB3, at 1,090,377 to 1,091,639
_RS24605
Position (kb) 1086
1087
1088
1089
1090 Strain fitness (log2 ratio) -2
-1
0
1 at 1086.098 kb on + strand, within BPHYT_RS24590 at 1086.236 kb on - strand at 1086.333 kb on + strand at 1086.333 kb on + strand at 1086.675 kb on + strand at 1087.070 kb on + strand, within BPHYT_RS24595 at 1087.070 kb on + strand, within BPHYT_RS24595 at 1087.070 kb on + strand, within BPHYT_RS24595 at 1087.071 kb on - strand, within BPHYT_RS24595 at 1087.172 kb on + strand, within BPHYT_RS24595 at 1087.214 kb on + strand, within BPHYT_RS24595 at 1087.578 kb on - strand, within BPHYT_RS24595 at 1087.635 kb on - strand, within BPHYT_RS24595 at 1087.829 kb on + strand, within BPHYT_RS24595 at 1088.052 kb on - strand, within BPHYT_RS24595 at 1088.243 kb on - strand, within BPHYT_RS24595 at 1088.477 kb on - strand, within BPHYT_RS24595 at 1088.615 kb on + strand, within BPHYT_RS24595 at 1088.615 kb on + strand, within BPHYT_RS24595 at 1088.615 kb on + strand, within BPHYT_RS24595 at 1088.616 kb on - strand, within BPHYT_RS24595 at 1088.708 kb on + strand, within BPHYT_RS24595 at 1088.708 kb on + strand, within BPHYT_RS24595 at 1089.164 kb on + strand, within BPHYT_RS24595 at 1089.336 kb on - strand at 1089.633 kb on + strand at 1089.919 kb on + strand, within BPHYT_RS24600 at 1089.920 kb on - strand, within BPHYT_RS24600 at 1089.931 kb on + strand, within BPHYT_RS24600 at 1090.177 kb on + strand, within BPHYT_RS24600 at 1090.434 kb on - strand at 1090.434 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 1,086,098 + BPHYT_RS24590 0.75 +0.7 1,086,236 - -0.6 1,086,333 + -0.5 1,086,333 + +0.0 1,086,675 + -0.5 1,087,070 + BPHYT_RS24595 0.10 +1.6 1,087,070 + BPHYT_RS24595 0.10 -0.6 1,087,070 + BPHYT_RS24595 0.10 -0.8 1,087,071 - BPHYT_RS24595 0.11 +0.1 1,087,172 + BPHYT_RS24595 0.14 +0.2 1,087,214 + BPHYT_RS24595 0.16 +0.3 1,087,578 - BPHYT_RS24595 0.28 +0.1 1,087,635 - BPHYT_RS24595 0.30 +1.3 1,087,829 + BPHYT_RS24595 0.37 -0.3 1,088,052 - BPHYT_RS24595 0.45 +0.3 1,088,243 - BPHYT_RS24595 0.52 +0.7 1,088,477 - BPHYT_RS24595 0.60 -0.4 1,088,615 + BPHYT_RS24595 0.65 +0.3 1,088,615 + BPHYT_RS24595 0.65 +0.1 1,088,615 + BPHYT_RS24595 0.65 -1.2 1,088,616 - BPHYT_RS24595 0.65 +0.0 1,088,708 + BPHYT_RS24595 0.68 +0.3 1,088,708 + BPHYT_RS24595 0.68 -0.8 1,089,164 + BPHYT_RS24595 0.85 +0.4 1,089,336 - -0.1 1,089,633 + -0.6 1,089,919 + BPHYT_RS24600 0.37 +0.1 1,089,920 - BPHYT_RS24600 0.38 -0.9 1,089,931 + BPHYT_RS24600 0.39 +0.1 1,090,177 + BPHYT_RS24600 0.72 +0.6 1,090,434 - -1.9 1,090,434 - +0.5
Or see this region's nucleotide sequence